Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.0e-61 240.0 126 100.0
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.0e-58 229.9 124 96.8
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 6.4e-16 87.8 42 97.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 6.4e-16 87.8 42 97.6
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 7.9e-14 80.9 42 85.7
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 3.0e-13 79.0 42 85.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.0e-13 79.0 42 83.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.0e-13 79.0 42 83.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.1e-12 77.0 42 81.0
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.1e-12 77.0 42 78.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.1e-12 77.0 41 85.4
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.5e-12 76.6 42 83.3
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 2.5e-12 75.9 42 78.6
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 3.3e-12 75.5 42 78.6
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.3e-12 75.5 42 78.6
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 5.6e-12 74.7 42 78.6
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 9.6e-12 73.9 45 73.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 9.6e-12 73.9 42 78.6
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 9.6e-12 73.9 42 76.2
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.1e-11 72.8 63 57.1
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 4.8e-11 71.6 42 73.8
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 4.8e-11 71.6 42 76.2
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.8e-11 71.6 42 76.2
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 4.8e-11 71.6 42 76.2
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 6.2e-11 71.2 42 73.8
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.2e-11 71.2 42 73.8
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 6.2e-11 71.2 93 49.5
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 8.1e-11 70.9 45 66.7
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 73.8
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 73.8
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.1e-10 70.5 42 78.6
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.1e-10 70.5 64 57.8
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.4e-10 70.1 42 76.2
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.4e-10 70.1 42 78.6
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.4e-10 70.1 42 73.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.4e-10 69.3 42 73.8
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.4e-10 69.3 42 76.2
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-10 69.3 42 71.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 2.4e-10 69.3 42 73.8
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.4e-10 69.3 42 73.8
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 3.1e-10 68.9 49 65.3
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 3.1e-10 68.9 42 73.8
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 3.1e-10 68.9 45 68.9
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 3.1e-10 68.9 45 68.9
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 3.1e-10 68.9 42 73.8
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 3.1e-10 68.9 64 56.2
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 3.1e-10 68.9 42 71.4
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 73.8
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 73.8
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 73.8
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 73.8
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.3e-10 68.2 42 73.8
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.3e-10 68.2 42 73.8
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 5.3e-10 68.2 42 71.4
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 5.3e-10 68.2 42 71.4
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 5.3e-10 68.2 42 73.8
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 6.9e-10 67.8 42 71.4
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 6.9e-10 67.8 42 71.4
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.9e-10 67.8 42 73.8
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 6.9e-10 67.8 42 71.4
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 6.9e-10 67.8 91 46.2
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 9.0e-10 67.4 42 71.4
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.2e-09 67.0 42 71.4
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.2e-09 67.0 42 73.8
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 73.8
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 73.8
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 2.6e-09 65.9 42 71.4
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.6e-09 65.9 42 71.4
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 2.6e-09 65.9 40 72.5
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.6e-09 65.9 45 66.7
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 2.6e-09 65.9 42 69.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.4e-09 65.5 45 66.7
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 3.4e-09 65.5 42 69.0
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 3.4e-09 65.5 42 71.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 5.8e-09 64.7 68 54.4
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 5.8e-09 64.7 42 69.0
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 5.8e-09 64.7 42 71.4
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 7.6e-09 64.3 45 68.9
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 7.6e-09 64.3 68 52.9
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 7.6e-09 64.3 42 73.8
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 9.9e-09 63.9 45 64.4
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.3e-08 63.5 45 66.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.3e-08 63.5 42 69.0
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.3e-08 63.5 42 69.0
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.7e-08 63.2 42 64.3
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.7e-08 63.2 42 64.3
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.2e-08 62.8 42 66.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.8e-08 62.0 42 66.7
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.1e-07 60.5 42 69.0
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.1e-07 60.5 42 64.3
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.9e-07 59.7 105 41.9
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.9e-07 59.7 107 41.1
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.9e-07 59.7 42 64.3
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 5.5e-07 58.2 42 64.3
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.3e-07 57.4 44 61.4
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.1e-06 56.2 42 59.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.1e-06 56.2 40 60.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.1e-06 56.2 40 60.0
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.0e-06 54.7 110 38.2


User provided reference genes

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