Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.8e-180 634.8 336 100.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.6e-130 468.8 337 77.4
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 3.0e-121 439.1 278 83.1
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.2e-120 437.2 282 81.9
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.4e-120 435.3 276 81.9
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.7e-119 432.2 278 80.9
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 3.5e-117 425.6 330 71.8
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.9e-116 422.5 326 71.8
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 8.5e-116 421.0 322 72.0
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.9e-115 419.9 321 70.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.2e-115 419.1 315 72.1
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 4.2e-115 418.7 336 66.7
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 9.4e-115 417.5 301 76.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.4e-113 413.7 319 72.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.2e-113 411.8 330 67.3
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 6.8e-113 411.4 313 70.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.2e-112 410.6 317 69.7
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 2.0e-112 409.8 263 80.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.4e-112 409.1 334 65.6
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 5.7e-112 408.3 318 71.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 7.5e-112 407.9 269 78.8
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 7.5e-112 407.9 260 80.8
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.7e-111 406.8 319 68.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.8e-111 406.0 326 68.7
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 3.7e-111 405.6 263 80.2
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 3.7e-111 405.6 333 66.7
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.3e-111 404.8 275 75.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 8.3e-111 404.4 305 71.5
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.3e-111 404.4 259 79.2
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 8.3e-111 404.4 324 68.8
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 8.3e-111 404.4 322 69.6
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.8e-110 403.3 263 77.2
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.8e-110 403.3 300 73.7
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.4e-110 402.9 303 72.6
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.1e-110 402.5 269 77.7
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 5.4e-110 401.7 305 70.2
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.4e-110 401.7 326 68.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 9.1e-110 401.0 303 70.6
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.2e-109 400.6 308 67.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.2e-109 400.6 334 66.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.6e-109 400.2 359 63.8
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.7e-109 399.4 263 76.8
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 2.7e-109 399.4 296 73.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 3.5e-109 399.1 307 70.4
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.9e-109 398.3 327 67.0
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 5.9e-109 398.3 259 78.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.0e-108 397.5 276 72.8
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.3e-108 397.1 284 73.6
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.3e-108 397.1 320 66.9
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.7e-108 396.7 331 66.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-108 396.7 259 78.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.7e-108 396.7 319 67.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.3e-108 396.4 327 66.4
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.3e-108 396.4 327 67.6
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.8e-108 395.6 335 65.4
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.0e-108 395.2 327 66.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 7.2e-107 391.3 262 76.3
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.6e-106 390.2 322 65.5
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.6e-106 389.0 314 67.5
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 4.7e-106 388.7 318 69.5
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 6.1e-106 388.3 262 74.0
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 6.1e-106 388.3 277 71.5
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 6.1e-106 388.3 250 80.4
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 8.0e-106 387.9 286 69.2
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 8.0e-106 387.9 297 66.7
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.8e-105 386.7 262 73.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 2.3e-105 386.3 262 73.3
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 4.0e-105 385.6 315 66.3
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.2e-105 385.2 312 67.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 6.8e-105 384.8 262 72.9
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 6.8e-105 384.8 327 65.4
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 6.8e-105 384.8 297 67.7
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.0e-104 383.3 324 67.3
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 7.5e-104 381.3 262 74.0
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 7.5e-104 381.3 262 72.5
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 7.5e-104 381.3 262 72.9
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 9.8e-104 380.9 262 72.1
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 9.8e-104 380.9 301 68.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.3e-103 380.6 298 67.1
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.3e-103 380.6 277 72.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.3e-103 378.3 312 65.7
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 8.3e-103 377.9 334 60.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.4e-102 377.1 324 64.8
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.4e-102 377.1 384 58.1
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 9.2e-102 374.4 272 69.9
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.0e-101 373.2 319 64.6
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.0e-101 373.2 235 81.3
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 5.9e-101 371.7 303 67.3
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 7.8e-101 371.3 333 63.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.5e-99 366.3 388 56.4
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.1e-98 361.7 305 65.6
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 8.0e-98 361.3 257 71.6
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-97 360.1 231 80.5
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-97 360.1 231 80.5
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.1e-97 359.4 273 68.1
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.6e-96 356.3 309 63.1
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.5e-96 354.8 268 75.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 2.4e-94 349.7 332 59.0
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.9e-91 340.1 257 66.9
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 1.2e-90 337.4 249 69.1
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.2e-85 320.9 220 77.7
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.5e-85 319.3 472 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 8.1e-82 308.1 267 57.3
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 8.1e-82 308.1 197 80.2
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.6e-80 303.1 249 68.7
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 4.1e-78 295.8 262 66.0
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.5e-77 292.7 267 55.4
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.0e-77 292.0 196 81.1
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.3e-76 290.0 218 72.5
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 6.6e-76 288.5 255 58.4
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.6e-75 285.4 218 69.3
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 5.6e-75 285.4 181 82.3
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 6.2e-74 282.0 248 57.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.8e-72 275.4 302 55.0
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.4e-70 270.8 261 51.3
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.3e-68 263.5 255 54.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.5e-59 234.2 205 66.3
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.6e-56 223.4 218 58.3
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.3e-55 221.1 153 69.9
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 5.4e-54 215.7 278 45.3
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 4.6e-53 212.6 235 49.4
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.1e-50 203.8 252 48.4
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 6.0e-45 185.7 202 55.4
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.1e-43 181.4 271 41.3
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.4e-25 121.3 98 67.3
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 7.7e-24 115.5 109 62.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.6e-21 107.8 142 51.4
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 6.7e-20 102.4 74 70.3
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.0e-16 90.9 72 66.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 3.8e-15 86.7 66 66.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.7e-13 80.5 63 61.9
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.6e-08 64.7 42 78.6
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 3.8e-07 60.1 87 46.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 8.5e-07 58.9 48 52.1
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 8.5e-07 58.9 71 42.3
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 4.2e-06 56.6 43 58.1


User provided reference genes

Program Settings