Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029431 Camellia sinensis var. sinensis HOM05D001229 ORTHO05D110714 9.9e-60 233.4 132 100.0
CSS0050134 Camellia sinensis var. sinensis HOM05D001229 ORTHO05D001374 2.4e-13 79.3 36 100.0
Rhsim12G0204800 Rhododendron simsii HOM05D001229 ORTHO05D001374 2.9e-11 72.4 36 91.7
Nitab4.5_0001967g0060 Nicotiana tabacum HOM05D001229 ORTHO05D001374 5.5e-10 68.2 39 84.6
Solyc03g121410.3 Solanum lycopersicum HOM05D001229 ORTHO05D001374 5.5e-10 68.2 39 84.6
Sopen03g040220 Solanum pennellii HOM05D001229 ORTHO05D001374 5.5e-10 68.2 39 84.6
vmacro16994 Vaccinium macrocarpon HOM05D001229 ORTHO05D001374 7.2e-10 67.8 36 86.1
Cc04_g02130 Coffea canephora HOM05D001229 ORTHO05D001374 9.4e-10 67.4 40 82.5
HanXRQChr02g0031521 Helianthus annuus HOM05D001229 ORTHO05D001374 1.2e-09 67.0 39 82.1
Peaxi162Scf00038g01329 Petunia axillaris HOM05D001229 ORTHO05D001374 1.2e-09 67.0 39 82.1
Nitab4.5_0005816g0020 Nicotiana tabacum HOM05D001229 ORTHO05D001374 1.6e-09 66.6 39 82.1
Lsat_1_v5_gn_1_36320 Lactuca sativa HOM05D001229 ORTHO05D001374 3.6e-09 65.5 39 79.5
Dinv30394 Davidia involucrata HOM05D001229 ORTHO05D001374 4.7e-09 65.1 39 87.2
Nn6g35419 Nelumbo nucifera HOM05D001229 ORTHO05D001374 1.4e-08 63.5 38 81.6
MSTRG.10998 Avicennia marina HOM05D001229 ORTHO05D001374 1.8e-08 63.2 39 79.5
Aa31LG7G2550 Aethionema arabicum HOM05D001229 ORTHO05D001374 2.3e-08 62.8 36 80.6
Nn8g38918 Nelumbo nucifera HOM05D001229 ORTHO05D001374 2.3e-08 62.8 38 81.6
AT1G17720 Arabidopsis thaliana HOM05D001229 ORTHO05D001374 3.0e-08 62.4 36 77.8
Oeu004339.2 Olea europaea HOM05D001229 ORTHO05D001374 3.0e-08 62.4 39 76.9
TAR636G0841 Trochodendron aralioides HOM05D001229 ORTHO05D001374 3.0e-08 62.4 38 78.9
Actinidia09021 Actinidia chinensis HOM05D001229 ORTHO05D001374 4.0e-08 62.0 36 75.0
BcaB07g34027 Brassica carinata HOM05D001229 ORTHO05D001374 4.0e-08 62.0 36 80.6
Dinv37929 Davidia involucrata HOM05D001229 ORTHO05D001374 4.0e-08 62.0 39 84.6
Thhalv10007406m.g Eutrema salsugineum HOM05D001229 ORTHO05D001374 4.0e-08 62.0 39 74.4
Solyc12g044800.3 Solanum lycopersicum HOM05D001229 ORTHO05D001374 4.0e-08 62.0 39 79.5
PGSC0003DMG400006741 Solanum tuberosum HOM05D001229 ORTHO05D001374 4.0e-08 62.0 39 79.5
Ciclev10025398m.g Citrus clementina HOM05D001229 ORTHO05D001374 5.2e-08 61.6 39 76.9
Sed0022299 Sechium edule HOM05D001229 ORTHO05D001374 5.2e-08 61.6 36 83.3
MSTRG.4761 Avicennia marina HOM05D001229 ORTHO05D001374 6.7e-08 61.2 39 76.9
Eucgr.F03107 Eucalyptus grandis HOM05D001229 ORTHO05D001374 6.7e-08 61.2 36 80.6
Potri.001G197300 Populus trichocarpa HOM05D001229 ORTHO05D001374 6.7e-08 61.2 37 78.4
Potri.003G034300 Populus trichocarpa HOM05D001229 ORTHO05D001374 6.7e-08 61.2 37 78.4
AL1G30070 Arabidopsis lyrata HOM05D001229 ORTHO05D001374 8.8e-08 60.8 39 71.8
CARHR018330 Cardamine hirsuta HOM05D001229 ORTHO05D001374 8.8e-08 60.8 39 71.8
Migut.D00977 Erythranthe guttata HOM05D001229 ORTHO05D001374 8.8e-08 60.8 39 76.9
Lj9A517T57 Lonicera japonica HOM05D001229 ORTHO05D001374 8.8e-08 60.8 39 79.5
TAR626G0821 Trochodendron aralioides HOM05D001229 ORTHO05D001352 8.8e-08 60.8 38 78.9
Carub.0001s1745 Capsella rubella HOM05D001229 ORTHO05D001374 1.2e-07 60.5 39 74.4
Nitab4.5_0006642g0040 Nicotiana tabacum HOM05D001229 ORTHO05D001374 1.2e-07 60.5 43 69.8
PGR102G1840 Punica granatum HOM05D001229 ORTHO05D001374 1.2e-07 60.5 36 80.6
Actinidia32138 Actinidia chinensis HOM05D001229 ORTHO05D001374 1.5e-07 60.1 40 70.0
Glyma.15G022900 Glycine max HOM05D001229 ORTHO05D001374 1.5e-07 60.1 37 81.1
Sopen12g023170 Solanum pennellii HOM05D001229 ORTHO05D001374 1.5e-07 60.1 34 79.4
GSVIVG01016885001 Vitis vinifera HOM05D001229 ORTHO05D001374 1.5e-07 60.1 36 75.0
MBI04_g37935_MAGBIO Magnolia biondii HOM05D001229 ORTHO05D011199 2.0e-07 59.7 35 82.9
Medtr2g100370 Medicago truncatula HOM05D001229 ORTHO05D001374 2.0e-07 59.7 38 78.9
Sc10g0007710 Simmondsia chinensis HOM05D001229 ORTHO05D001374 2.0e-07 59.7 37 75.7
Sc10g0007740 Simmondsia chinensis HOM05D001229 ORTHO05D001374 2.0e-07 59.7 37 75.7
ECA232G0191 Erigeron canadensis HOM05D001229 ORTHO05D001374 2.6e-07 59.3 37 81.1
FvH4_6g33020 Fragaria vesca HOM05D001229 ORTHO05D001374 2.6e-07 59.3 39 79.5
FAN02G3149 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.6e-07 59.3 39 79.5
FAN05G0388 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.6e-07 59.3 39 79.5
FAN09G4252 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.6e-07 59.3 39 79.5
FAN14G3716 Fragaria x ananassa HOM05D001229 ORTHO05D001374 2.6e-07 59.3 39 79.5
Glyma.08G195200 Glycine max HOM05D001229 ORTHO05D001374 2.6e-07 59.3 37 78.4
HanXRQChr12g0360731 Helianthus annuus HOM05D001229 ORTHO05D001374 2.6e-07 59.3 38 78.9
Manes.04G138000 Manihot esculenta HOM05D001229 ORTHO05D001374 2.6e-07 59.3 37 78.4
Manes.11G028200 Manihot esculenta HOM05D001229 ORTHO05D001374 2.6e-07 59.3 37 78.4
Sabra01G0156500 Salix brachista HOM05D001229 ORTHO05D001374 2.6e-07 59.3 37 78.4
arahy.Tifrunner.gnm1.ann1.D3EF7U Arachis hypogaea HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
arahy.Tifrunner.gnm1.ann1.T03YFB Arachis hypogaea HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
Glyma.07G012000 Glycine max HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
Gohir.D05G135900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 75.7
Gorai.009G139900 Gossypium raimondii HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 75.7
Phvul.010G141300 Phaseolus vulgaris HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
Psat5g294160 Pisum sativum HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
SalBow7G0448 Salvia bowleyana HOM05D001229 ORTHO05D001374 3.3e-07 58.9 39 74.4
SGA_v2.0_scaffold71G23742 Striga asiatica HOM05D001229 ORTHO05D001374 3.3e-07 58.9 41 70.7
VMungo0331G1827 Vigna mungo HOM05D001229 ORTHO05D001374 3.3e-07 58.9 37 78.4
arahy.Tifrunner.gnm1.ann1.4N5DEN Arachis hypogaea HOM05D001229 ORTHO05D001374 4.4e-07 58.5 37 78.4
arahy.Tifrunner.gnm1.ann1.T4HWHV Arachis hypogaea HOM05D001229 ORTHO05D001374 4.4e-07 58.5 37 78.4
Glyma.13G351800 Glycine max HOM05D001229 ORTHO05D001374 4.4e-07 58.5 37 78.4
Lj5C48G0 Lonicera japonica HOM05D001229 ORTHO05D001374 4.4e-07 58.5 40 77.5
MD17G1176000 Malus domestica HOM05D001229 ORTHO05D001374 4.4e-07 58.5 38 76.3
Nitab4.5_0000255g0130 Nicotiana tabacum HOM05D001229 ORTHO05D001374 4.4e-07 58.5 36 80.6
SGA_v2.0_scaffold4G02037 Striga asiatica HOM05D001229 ORTHO05D001374 4.4e-07 58.5 39 74.4
Ca_01184_v3 Cicer arietinum L. HOM05D001229 ORTHO05D001374 5.7e-07 58.2 37 78.4
Lalb_Chr01g0013351 Lupinus albus HOM05D001229 ORTHO05D001374 5.7e-07 58.2 39 71.8
THA.LOC104805916 Tarenaya hassleriana HOM05D001229 ORTHO05D001374 5.7e-07 58.2 39 76.9
CiPaw.01G226700 Carya illinoinensis HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 79.5
CiPaw.02G141700 Carya illinoinensis HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 79.5
COL.COLO4_30614 Corchorus olitorius HOM05D001229 ORTHO05D011199 7.5e-07 57.8 37 75.7
Gohir.A05G133900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 75.7
Gohir.A10G061900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 75.7
Gohir.D10G063500 Gossypium hirsutum HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 75.7
Gorai.011G067400 Gossypium raimondii HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 75.7
Prupe.3G052100 Prunus persica HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 79.5
QL05p015510 Quercus lobata HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 79.5
QL05p016114 Quercus lobata HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 79.5
RcHm_v2.0_Chr2g0142561 Rosa chinensis HOM05D001229 ORTHO05D001374 7.5e-07 57.8 39 76.9
THA.LOC104812210 Tarenaya hassleriana HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 73.0
Thecc.06G108500 Theobroma cacao HOM05D001229 ORTHO05D001374 7.5e-07 57.8 37 75.7
Thhalv10020527m.g Eutrema salsugineum HOM05D001229 ORTHO05D001374 9.7e-07 57.4 36 69.4
Lsat_1_v5_gn_4_95740 Lactuca sativa HOM05D001229 ORTHO05D001374 9.7e-07 57.4 36 75.0
Lalb_Chr24g0396281 Lupinus albus HOM05D001229 ORTHO05D001374 9.7e-07 57.4 37 75.7
Oeu039978.2 Olea europaea HOM05D001229 ORTHO05D001374 9.7e-07 57.4 39 74.4
Hund03348 Selenicereus undatus HOM05D001229 ORTHO05D001374 9.7e-07 57.4 34 79.4
Solyc06g062530.4 Solanum lycopersicum HOM05D001229 ORTHO05D001374 9.7e-07 57.4 36 77.8
Sopen06g022010 Solanum pennellii HOM05D001229 ORTHO05D001374 9.7e-07 57.4 36 77.8
SGA_v2.0_scaffold45G16995 Striga asiatica HOM05D001229 ORTHO05D001374 9.7e-07 57.4 37 75.7
ECA247G2134 Erigeron canadensis HOM05D001229 ORTHO05D001374 1.3e-06 57.0 39 71.8
Migut.I01006 Erythranthe guttata HOM05D001229 ORTHO05D001374 1.3e-06 57.0 41 68.3
MD09G1195400 Malus domestica HOM05D001229 ORTHO05D001374 1.3e-06 57.0 38 73.7
Atru.chr1.3660 Acer truncatum HOM05D001229 ORTHO05D001374 1.7e-06 56.6 44 65.9
AL1G59630 Arabidopsis lyrata HOM05D001229 ORTHO05D001374 1.7e-06 56.6 37 73.0
Cfa003602 Carpinus fangiana HOM05D001229 ORTHO05D001374 1.7e-06 56.6 39 76.9
Duzib235G0228 Durio zibethinus HOM05D001229 ORTHO05D001374 1.7e-06 56.6 39 76.9
Eucgr.C00639 Eucalyptus grandis HOM05D001229 ORTHO05D001374 1.7e-06 56.6 38 73.7
Sabra03G0030200 Salix brachista HOM05D001229 ORTHO05D001374 1.7e-06 56.6 37 73.0
Aqoxy7G01265 Aquilegia oxysepala HOM05D001229 ORTHO05D001374 2.2e-06 56.2 39 69.2
EL10Ac2g03915 Beta vulgaris HOM05D001229 ORTHO05D001374 2.2e-06 56.2 36 72.2
Rhsim08G0231900 Rhododendron simsii HOM05D001229 ORTHO05D001374 2.2e-06 56.2 49 63.3
Aa31LG8G7960 Aethionema arabicum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 36 66.7
MSTRG.22602 Avicennia marina HOM05D001229 ORTHO05D001374 2.8e-06 55.8 39 69.2
CDE05G3128 Ceratophyllum demersum HOM05D001229 ORTHO05D011199 2.8e-06 55.8 36 75.0
CDE05G3654 Ceratophyllum demersum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 36 75.0
ClCG09G000560 Citrullus lanatus HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
MELO3C024401.2 Cucumis melo HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
CsaV3_7G034890 Cucumis sativus L. HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
Gohir.A02G115900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
Gohir.D03G056900 Gossypium hirsutum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
Gorai.003G060000 Gossypium raimondii HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 73.0
HanXRQChr05g0139961 Helianthus annuus HOM05D001229 ORTHO05D001374 2.8e-06 55.8 36 75.0
Nitab4.5_0001483g0070 Nicotiana tabacum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 36 77.8
Psat4g193360 Pisum sativum HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 75.7
Sabra18G0049600 Salix brachista HOM05D001229 ORTHO05D001374 2.8e-06 55.8 38 76.3
Sed0002255 Sechium edule HOM05D001229 ORTHO05D001374 2.8e-06 55.8 37 75.7
Ah.01g004480 Amaranthus hybridus HOM05D001229 ORTHO05D001374 3.7e-06 55.5 44 63.6
Cpa.g.sc131.38 Carica papaya HOM05D001229 ORTHO05D001374 3.7e-06 55.5 37 73.0
Gohir.D09G080400 Gossypium hirsutum HOM05D001229 ORTHO05D001374 3.7e-06 55.5 37 70.3
Gorai.006G095900 Gossypium raimondii HOM05D001229 ORTHO05D001374 3.7e-06 55.5 37 70.3
HanXRQChr09g0276351 Helianthus annuus HOM05D001229 ORTHO05D001374 3.7e-06 55.5 36 75.0
Peaxi162Scf00177g00218 Petunia axillaris HOM05D001229 ORTHO05D001374 3.7e-06 55.5 30 90.0
TPR.G24240 Trifolium pratense HOM05D001229 ORTHO05D001374 3.7e-06 55.5 37 75.7
TWI63G0818 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 3.7e-06 55.5 40 72.5
HPP92_024434 Vanilla planifolia HOM05D001229 ORTHO05D001374 3.7e-06 55.5 41 70.7
CDE05G2106 Ceratophyllum demersum HOM05D001229 ORTHO05D001374 4.8e-06 55.1 36 75.0
Lalb_Chr14g0372861 Lupinus albus HOM05D001229 ORTHO05D001374 4.8e-06 55.1 37 73.0
Phvul.005G161000 Phaseolus vulgaris HOM05D001229 ORTHO05D001374 4.8e-06 55.1 37 73.0
THA.LOC104817931 Tarenaya hassleriana HOM05D001229 ORTHO05D001374 4.8e-06 55.1 39 74.4
TWI34G0565 Tripterygium wilfordii HOM05D001229 ORTHO05D001374 4.8e-06 55.1 40 70.0
Duzib192G0833 Durio zibethinus HOM05D001229 ORTHO05D001374 6.3e-06 54.7 39 74.4
ECA234G3256 Erigeron canadensis HOM05D001229 ORTHO05D001374 6.3e-06 54.7 36 75.0
Oeu002519.1 Olea europaea HOM05D001229 ORTHO05D001374 6.3e-06 54.7 39 71.8
Potri.018G055001 Populus trichocarpa HOM05D001229 ORTHO05D001374 6.3e-06 54.7 39 71.8
TPR.G6548 Trifolium pratense HOM05D001229 ORTHO05D001374 6.3e-06 54.7 36 69.4
Actinidia39121 Actinidia chinensis HOM05D001229 ORTHO05D001374 8.2e-06 54.3 36 69.4
Hma1.2p1_0450F.1_g155590 Hydrangea macrophylla HOM05D001229 ORTHO05D001374 8.2e-06 54.3 36 75.0
Lj3g0022944 Lotus japonicus HOM05D001229 ORTHO05D001374 8.2e-06 54.3 37 73.0
Lalb_Chr25g0280581 Lupinus albus HOM05D001229 ORTHO05D001374 8.2e-06 54.3 40 72.5
Sp1g15810 Schrenkiella parvula HOM05D001229 ORTHO05D001374 8.2e-06 54.3 39 66.7
VMungo1080G1859 Vigna mungo HOM05D001229 ORTHO05D001374 8.2e-06 54.3 37 73.0


User provided reference genes

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