Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 4.7e-91 337.8 165 100.0
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.5e-17 93.6 132 43.9
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 7.6e-17 91.3 131 43.5
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 7.6e-17 91.3 131 43.5
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.2e-16 89.7 132 42.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 5.5e-15 85.1 132 40.9
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 7.1e-15 84.7 132 40.9
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 9.3e-15 84.3 94 51.1
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.2e-14 84.0 93 51.6
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-14 83.6 94 51.1
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.7e-14 82.8 94 48.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.5e-14 82.4 93 50.5
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.5e-14 82.4 93 50.5
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 4.6e-14 82.0 132 40.9
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 4.6e-14 82.0 93 49.5
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 4.6e-14 82.0 93 49.5
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 7.9e-14 81.3 93 49.5
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 7.9e-14 81.3 94 47.9
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 7.9e-14 81.3 94 50.0
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.0e-13 80.9 93 51.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.0e-13 80.9 93 49.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.3e-13 80.5 97 46.4
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.3e-13 80.5 93 50.5
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.8e-13 80.1 93 49.5
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.8e-13 80.1 93 49.5
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.8e-13 80.1 93 50.5
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.3e-13 79.7 132 38.6
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 2.3e-13 79.7 132 38.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.3e-13 79.7 132 38.6
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.0e-13 79.3 93 47.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 3.9e-13 79.0 94 47.9
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 5.1e-13 78.6 93 46.2
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 5.1e-13 78.6 93 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 6.7e-13 78.2 105 43.8
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 6.7e-13 78.2 93 48.4
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 8.7e-13 77.8 93 47.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.1e-12 77.4 95 48.4
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.1e-12 77.4 132 38.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.1e-12 77.4 93 48.4
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.1e-12 77.4 94 45.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.5e-12 77.0 94 46.8
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.5e-12 77.0 93 48.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.5e-12 77.0 93 48.4
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.5e-12 77.0 94 46.8
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.5e-12 77.0 93 45.2
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.9e-12 76.6 132 37.9
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.9e-12 76.6 94 46.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.9e-12 76.6 94 45.7
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.9e-12 76.6 94 45.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.9e-12 76.6 94 45.7
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.9e-12 76.6 93 48.4
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.9e-12 76.6 94 45.7
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.9e-12 76.6 93 47.3
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.5e-12 76.3 93 47.3
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.5e-12 76.3 93 46.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.5e-12 76.3 95 45.3
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 3.3e-12 75.9 94 45.7
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 4.3e-12 75.5 97 45.4
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 4.3e-12 75.5 97 45.4
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 4.3e-12 75.5 93 46.2
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.3e-12 75.5 94 45.7
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.3e-12 75.5 93 47.3
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 4.3e-12 75.5 132 39.4
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 5.6e-12 75.1 95 44.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 5.6e-12 75.1 93 45.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 7.4e-12 74.7 95 44.2
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 7.4e-12 74.7 95 44.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 9.6e-12 74.3 94 44.7
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 9.6e-12 74.3 94 44.7
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 9.6e-12 74.3 93 45.2
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.3e-11 73.9 93 45.2
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.6e-11 73.6 132 37.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.6e-11 73.6 109 40.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.6e-11 73.6 93 46.2
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.1e-11 73.2 95 45.3
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.1e-11 73.2 93 44.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 2.8e-11 72.8 109 44.0
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.8e-11 72.8 93 44.1
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.8e-11 72.8 104 40.4
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.7e-11 72.4 95 44.2
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.7e-11 72.4 95 44.2
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.7e-11 72.4 95 44.2
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 3.7e-11 72.4 93 45.2
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 3.7e-11 72.4 93 45.2
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.7e-11 72.4 95 44.2
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 6.2e-11 71.6 95 44.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 6.2e-11 71.6 95 44.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 6.2e-11 71.6 95 44.2
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 6.2e-11 71.6 95 44.2
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 6.2e-11 71.6 94 44.7
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 6.2e-11 71.6 95 43.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.2e-11 71.6 93 44.1
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 8.1e-11 71.2 94 41.5
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.1e-10 70.9 95 44.2
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.4e-10 70.5 102 44.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.4e-10 70.5 95 43.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.8e-10 70.1 95 43.2
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.4e-10 69.7 125 37.6
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 4.0e-10 68.9 95 43.2
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 5.3e-10 68.6 113 40.7
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 6.9e-10 68.2 91 44.0
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.9e-10 68.2 91 44.0
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 9.0e-10 67.8 94 40.4
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 9.0e-10 67.8 94 40.4
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.2e-09 67.4 93 39.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.2e-09 67.4 94 40.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.5e-09 67.0 94 40.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.5e-09 67.0 94 40.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.4e-09 65.9 94 39.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.4e-09 65.9 94 41.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.8e-09 65.1 107 37.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 7.6e-09 64.7 94 39.4
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 7.6e-09 64.7 94 38.3
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.0e-08 64.3 89 42.7
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.0e-08 64.3 89 42.7
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.3e-08 63.9 89 41.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.3e-08 63.9 94 40.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 6.5e-08 61.6 108 37.0
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.1e-07 60.8 94 36.2


User provided reference genes

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