Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.6e-83 312.8 162 100.0
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.6e-83 311.2 162 99.4
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.4e-57 224.2 121 93.4
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.2e-52 208.8 120 88.3
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-49 199.1 120 85.8
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.8e-48 194.9 105 94.3
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 8.2e-48 194.1 105 92.4
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.2e-46 190.3 105 90.5
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-46 188.7 105 88.6
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-46 188.7 105 88.6
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.4e-46 188.7 105 86.7
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 5.9e-46 188.0 108 85.2
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 5.9e-46 188.0 108 88.0
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 5.9e-46 188.0 105 89.5
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.7e-46 187.6 105 88.6
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.7e-46 187.6 105 88.6
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 7.7e-46 187.6 105 88.6
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.0e-45 187.2 105 87.6
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 1.0e-45 187.2 105 88.6
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-45 186.4 105 88.6
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.7e-45 186.4 105 86.7
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 1.7e-45 186.4 105 87.6
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.2e-45 186.0 105 87.6
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 2.2e-45 186.0 108 84.3
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 2.2e-45 186.0 134 73.9
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 2.2e-45 186.0 105 86.7
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.9e-45 185.7 105 86.7
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.9e-45 185.7 105 84.8
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 2.9e-45 185.7 105 86.7
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 2.9e-45 185.7 105 88.6
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.8e-45 185.3 105 86.7
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 3.8e-45 185.3 105 86.7
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 3.8e-45 185.3 105 87.6
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 5.0e-45 184.9 105 88.6
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 5.0e-45 184.9 105 87.6
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.0e-45 184.9 105 85.7
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.0e-45 184.9 105 85.7
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 5.0e-45 184.9 105 86.7
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.0e-45 184.9 105 86.7
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 6.5e-45 184.5 105 85.7
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 6.5e-45 184.5 105 87.6
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 6.5e-45 184.5 106 84.9
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 6.5e-45 184.5 105 87.6
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 6.5e-45 184.5 105 85.7
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 8.5e-45 184.1 105 85.7
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 8.5e-45 184.1 105 87.6
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 8.5e-45 184.1 105 84.8
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 8.5e-45 184.1 105 85.7
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.5e-45 184.1 100 91.0
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.1e-44 183.7 108 85.2
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.1e-44 183.7 108 85.2
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.1e-44 183.7 108 85.2
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 84.8
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.1e-44 183.7 105 85.7
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.4e-44 183.3 100 89.0
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.4e-44 183.3 105 86.7
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.4e-44 183.3 105 85.7
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 1.4e-44 183.3 105 84.8
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.4e-44 183.3 108 84.3
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.4e-44 183.3 105 84.8
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.4e-44 183.3 105 84.8
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 85.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 84.8
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 85.7
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 84.8
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 85.7
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 1.9e-44 183.0 105 82.9
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.5e-44 182.6 105 83.8
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.5e-44 182.6 105 83.8
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.5e-44 182.6 105 83.8
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.5e-44 182.6 105 85.7
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 3.2e-44 182.2 105 85.7
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 3.2e-44 182.2 105 84.8
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 3.2e-44 182.2 105 84.8
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 3.2e-44 182.2 105 83.8
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 3.2e-44 182.2 105 84.8
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 4.2e-44 181.8 105 84.8
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 4.2e-44 181.8 108 83.3
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 5.5e-44 181.4 105 84.8
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 5.5e-44 181.4 105 83.8
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 83.8
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 83.8
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 83.8
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 85.7
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 81.9
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 7.2e-44 181.0 105 81.9
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 85.7
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 82.9
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 82.9
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 82.9
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 85.7
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 9.4e-44 180.6 105 85.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.2e-43 180.3 105 81.9
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 1.2e-43 180.3 105 83.8
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.2e-43 180.3 105 85.7
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 1.6e-43 179.9 105 81.9
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.6e-43 179.9 105 81.9
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.6e-43 179.9 105 84.8
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 2.1e-43 179.5 105 82.9
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 2.1e-43 179.5 105 82.9
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 3.6e-43 178.7 105 84.8
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 3.6e-43 178.7 105 83.8
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 3.6e-43 178.7 122 77.0
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.6e-43 178.3 105 81.9
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 4.6e-43 178.3 108 82.4
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 4.6e-43 178.3 105 81.0
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.6e-43 178.3 100 86.0
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 4.6e-43 178.3 105 83.8
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 6.1e-43 177.9 105 80.0
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 6.1e-43 177.9 108 82.4
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 7.9e-43 177.6 111 77.5
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 7.9e-43 177.6 108 77.8
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 7.9e-43 177.6 105 81.9
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.9e-43 177.6 105 80.0
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 1.4e-42 176.8 105 79.0
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 1.4e-42 176.8 105 79.0
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 1.4e-42 176.8 105 79.0
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.4e-42 176.8 114 75.4
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 1.4e-42 176.8 105 78.1
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.4e-42 176.8 105 82.9
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.8e-42 176.4 105 78.1
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.8e-42 176.4 105 78.1
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.8e-42 176.4 105 78.1
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.8e-42 176.4 105 81.9
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 3.0e-42 175.6 105 81.0
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.0e-42 175.6 105 80.0
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 3.9e-42 175.3 105 81.9
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.9e-42 175.3 108 75.9
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 5.1e-42 174.9 105 81.9
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 8.8e-42 174.1 100 84.0
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 8.8e-42 174.1 120 75.8
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 1.1e-41 173.7 100 81.0
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.1e-41 173.7 105 81.0
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 3.3e-41 172.2 100 80.0
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 4.3e-41 171.8 108 75.0
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.7e-40 169.9 108 75.0
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 4.8e-40 168.3 100 83.0
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.4e-39 166.8 113 76.1
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 2.5e-36 156.0 104 70.2
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 5.5e-36 154.8 93 77.4
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.1e-35 152.9 105 74.3
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.1e-35 152.9 105 74.3
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 1.8e-34 149.8 106 67.0
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 3.0e-34 149.1 105 72.4
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 3.7e-32 142.1 106 62.3
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 6.3e-32 141.4 105 64.8
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 4.5e-30 135.2 93 73.1
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 5.9e-30 134.8 79 82.3
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 7.7e-30 134.4 74 87.8
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.0e-29 134.0 74 86.5
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 4.7e-27 125.2 72 80.6
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 2.6e-25 119.4 72 79.2
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 4.4e-25 118.6 105 61.9
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 4.4e-25 118.6 105 61.0
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.0e-22 109.8 63 84.1
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 3.8e-21 105.5 73 67.1
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 8.5e-21 104.4 108 52.8
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 2.5e-20 102.8 64 79.7
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 9.4e-20 100.9 107 42.1
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.8e-18 96.7 46 95.7
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 6.8e-18 94.7 63 71.4
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.0e-17 93.2 58 75.9
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.8e-15 86.7 58 79.3
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 4.1e-15 85.5 45 88.9
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 2.0e-14 83.2 42 90.5
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 2.0e-14 83.2 42 90.5
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 5.9e-14 81.6 53 75.5
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 2.0e-09 66.6 35 85.7
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 2.7e-06 56.2 32 84.4


User provided reference genes

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