Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029349 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000997 1.3e-70 269.6 133 100.0
CSS0014514 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000997 1.3e-27 126.7 73 84.9
Actinidia19583 Actinidia chinensis HOM05D000129 ORTHO05D000997 4.2e-26 121.7 61 93.4
Thecc.08G086700 Theobroma cacao HOM05D000129 ORTHO05D000997 4.2e-26 121.7 73 80.8
Gohir.A05G210900 Gossypium hirsutum HOM05D000129 ORTHO05D000997 5.5e-26 121.3 73 80.8
Gohir.D05G214200 Gossypium hirsutum HOM05D000129 ORTHO05D000997 5.5e-26 121.3 73 80.8
Dinv44942 Davidia involucrata HOM05D000129 ORTHO05D000997 7.2e-26 120.9 73 79.5
Gorai.009G220900 Gossypium raimondii HOM05D000129 ORTHO05D000997 9.4e-26 120.6 73 79.5
Rhsim07G0219200 Rhododendron simsii HOM05D000129 ORTHO05D000997 9.4e-26 120.6 82 73.2
vmacro22048 Vaccinium macrocarpon HOM05D000129 ORTHO05D000997 9.4e-26 120.6 61 91.8
ATR0739G155 Amborella trichopoda HOM05D000129 ORTHO05D000997 1.2e-25 120.2 73 79.5
Duzib093G1703 Durio zibethinus HOM05D000129 ORTHO05D000997 1.2e-25 120.2 73 79.5
Cfa013761 Carpinus fangiana HOM05D000129 ORTHO05D000997 2.1e-25 119.4 73 79.5
CiPaw.07G173500 Carya illinoinensis HOM05D000129 ORTHO05D000997 2.1e-25 119.4 60 91.7
Haze_22417 Corylus avellana HOM05D000129 ORTHO05D000997 2.1e-25 119.4 73 79.5
TAR381G0044 Trochodendron aralioides HOM05D000129 ORTHO05D000997 2.7e-25 119.0 83 72.3
Lsat_1_v5_gn_9_76580 Lactuca sativa HOM05D000129 ORTHO05D000997 3.6e-25 118.6 61 88.5
Prupe.1G421100 Prunus persica HOM05D000129 ORTHO05D000997 3.6e-25 118.6 61 90.2
Aqoxy6G02557 Aquilegia oxysepala HOM05D000129 ORTHO05D000997 4.7e-25 118.2 73 79.5
Ciclev10000142m.g Citrus clementina HOM05D000129 ORTHO05D000997 4.7e-25 118.2 61 90.2
Hma1.2p1_1170F.1_g263330 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 6.1e-25 117.9 73 76.7
Hma1.2p1_1170F.1_g263340 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 6.1e-25 117.9 73 76.7
Manes.18G047600 Manihot esculenta HOM05D000129 ORTHO05D000997 6.1e-25 117.9 61 86.9
Lj4C73G4 Lonicera japonica HOM05D000129 ORTHO05D000997 8.0e-25 117.5 68 82.4
Lalb_Chr23g0267561 Lupinus albus HOM05D000129 ORTHO05D000997 1.0e-24 117.1 73 76.7
MD15G1067300 Malus domestica HOM05D000129 ORTHO05D000997 1.0e-24 117.1 60 90.0
HanXRQChr12g0368611 Helianthus annuus HOM05D000129 ORTHO05D000997 1.4e-24 116.7 65 83.1
Atru.chr13.850 Acer truncatum HOM05D000129 ORTHO05D000997 1.8e-24 116.3 60 93.3
MD08G1080200 Malus domestica HOM05D000129 ORTHO05D000997 1.8e-24 116.3 61 88.5
Glyma.04G046700 Glycine max HOM05D000129 ORTHO05D000997 2.3e-24 115.9 73 76.7
SEGI_00929 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 2.3e-24 115.9 65 84.6
GSVIVG01009320001 Vitis vinifera HOM05D000129 ORTHO05D000997 2.3e-24 115.9 73 75.3
Eucgr.F02237 Eucalyptus grandis HOM05D000129 ORTHO05D000997 3.0e-24 115.5 73 78.1
Potri.014G014700 Populus trichocarpa HOM05D000129 ORTHO05D000997 3.0e-24 115.5 61 86.9
COL.COLO4_28481 Corchorus olitorius HOM05D000129 ORTHO05D000997 4.0e-24 115.2 73 78.1
ECA232G0094 Erigeron canadensis HOM05D000129 ORTHO05D000997 4.0e-24 115.2 65 83.1
QL12p038296 Quercus lobata HOM05D000129 ORTHO05D000997 4.0e-24 115.2 59 89.8
Sc15g0005610 Simmondsia chinensis HOM05D000129 ORTHO05D000997 5.2e-24 114.8 61 86.9
CDE01G0303 Ceratophyllum demersum HOM05D000129 ORTHO05D000997 6.8e-24 114.4 60 86.7
PSO675G3743 Papaver somniferum HOM05D000129 ORTHO05D000997 8.8e-24 114.0 60 88.3
Phvul.009G072800 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 8.8e-24 114.0 73 74.0
RcHm_v2.0_Chr6g0309841 Rosa chinensis HOM05D000129 ORTHO05D000997 8.8e-24 114.0 60 88.3
Nn5g30632 Nelumbo nucifera HOM05D000129 ORTHO05D000997 1.5e-23 113.2 61 86.9
Sabra14G0008800 Salix brachista HOM05D000129 ORTHO05D000997 1.5e-23 113.2 60 86.7
FAN15G0647 Fragaria x ananassa HOM05D000129 ORTHO05D000997 2.0e-23 112.8 60 88.3
FAN27G3321 Fragaria x ananassa HOM05D000129 ORTHO05D000997 2.0e-23 112.8 60 88.3
Hund02410 Selenicereus undatus HOM05D000129 ORTHO05D000997 2.0e-23 112.8 60 86.7
HPP92_027954 Vanilla planifolia HOM05D000129 ORTHO05D000997 2.0e-23 112.8 61 83.6
arahy.Tifrunner.gnm1.ann1.2ZDN53 Arachis hypogaea HOM05D000129 ORTHO05D000997 2.6e-23 112.5 61 83.6
arahy.Tifrunner.gnm1.ann1.NRZN5K Arachis hypogaea HOM05D000129 ORTHO05D000997 2.6e-23 112.5 61 83.6
Peaxi162Scf00551g00068 Petunia axillaris HOM05D000129 ORTHO05D000997 2.6e-23 112.5 83 66.3
Potri.002G117400 Populus trichocarpa HOM05D000129 ORTHO05D000997 2.6e-23 112.5 61 82.0
CANSAT11G2151 Cannabis sativa HOM05D000129 ORTHO05D000997 5.7e-23 111.3 59 83.1
CAN.G674.46 Capsicum annuum HOM05D000129 ORTHO05D000997 5.7e-23 111.3 73 71.2
Nitab4.5_0005086g0040 Nicotiana tabacum HOM05D000129 ORTHO05D000997 7.5e-23 110.9 73 72.6
Phvul.009G072366 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 7.5e-23 110.9 73 72.6
Solyc07g022780.2 Solanum lycopersicum HOM05D000129 ORTHO05D000997 7.5e-23 110.9 73 71.2
Sopen07g012030 Solanum pennellii HOM05D000129 ORTHO05D000997 7.5e-23 110.9 73 71.2
VMungo1309G1806 Vigna mungo HOM05D000129 ORTHO05D000997 7.5e-23 110.9 73 72.6
Zm00001eb056130 Zea mays HOM05D000129 ORTHO05D000997 7.5e-23 110.9 68 79.4
A06p06780 Brassica napus HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
C05p08260 Brassica napus HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
BraA06t23893Z Brassica rapa HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
Thhalv10006682m.g Eutrema salsugineum HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
Nitab4.5_0005915g0020 Nicotiana tabacum HOM05D000129 ORTHO05D000997 9.8e-23 110.5 73 71.2
Oeu053077.1 Olea europaea HOM05D000129 ORTHO05D000997 9.8e-23 110.5 68 77.9
PSO541G1994 Papaver somniferum HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
Sp1g08760 Schrenkiella parvula HOM05D000129 ORTHO05D000997 9.8e-23 110.5 60 83.3
AL1G20820 Arabidopsis lyrata HOM05D000129 ORTHO05D000997 1.7e-22 109.8 61 82.0
BcaC05g24810 Brassica carinata HOM05D000129 ORTHO05D000997 1.7e-22 109.8 60 83.3
BolC5t29577H Brassica oleracea HOM05D000129 ORTHO05D000997 1.7e-22 109.8 60 83.3
Carub.0001s0954 Capsella rubella HOM05D000129 ORTHO05D000997 1.7e-22 109.8 61 82.0
CARHR010230 Cardamine hirsuta HOM05D000129 ORTHO05D000997 1.7e-22 109.8 61 82.0
FvH4_2g32870 Fragaria vesca HOM05D000129 ORTHO05D000997 1.7e-22 109.8 60 86.7
MBI16_g12921_MAGBIO Magnolia biondii HOM05D000129 ORTHO05D000997 1.7e-22 109.8 66 78.8
Sed0025438 Sechium edule HOM05D000129 ORTHO05D000997 1.7e-22 109.8 94 61.7
AT1G10130 Arabidopsis thaliana HOM05D000129 ORTHO05D000997 2.8e-22 109.0 61 80.3
Lj1g0005699 Lotus japonicus HOM05D000129 ORTHO05D000997 2.8e-22 109.0 61 82.0
SHI08432 Sapria himalayana HOM05D000129 ORTHO05D000997 2.8e-22 109.0 60 83.3
THA.LOC104816765 Tarenaya hassleriana HOM05D000129 ORTHO05D000997 2.8e-22 109.0 61 82.0
EL10Ac8g19856 Beta vulgaris HOM05D000129 ORTHO05D000997 4.8e-22 108.2 60 81.7
FAN24G2434 Fragaria x ananassa HOM05D000129 ORTHO05D000997 4.8e-22 108.2 60 85.0
AagrBONN_evm.TU.Sc2ySwM_344.3348 Anthoceros agrestis HOM05D000129 ORTHO05D000997 8.3e-22 107.5 73 71.2
ClCG08G016600 Citrullus lanatus HOM05D000129 ORTHO05D000997 8.3e-22 107.5 94 62.8
PGR031G0208 Punica granatum HOM05D000129 ORTHO05D000997 1.1e-21 107.1 60 83.3
Ca_15897_v3 Cicer arietinum L. HOM05D000129 ORTHO05D000997 1.4e-21 106.7 88 62.5
Os03g0730800 Oryza sativa ssp. japonica HOM05D000129 ORTHO05D000997 1.4e-21 106.7 68 79.4
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 1.8e-21 106.3 73 69.9
Aa31LG1G4760 Aethionema arabicum HOM05D000129 ORTHO05D000997 2.4e-21 105.9 61 78.7
Mapoly0044s0031 Marchantia polymorpha HOM05D000129 ORTHO05D000997 2.4e-21 105.9 61 78.7
Pp3c11_7920 Physcomitrium patens HOM05D000129 ORTHO05D000997 2.4e-21 105.9 75 68.0
BcaC07g41841 Brassica carinata HOM05D000129 ORTHO05D000997 3.1e-21 105.5 60 81.7
A09p65190 Brassica napus HOM05D000129 ORTHO05D000997 3.1e-21 105.5 60 81.7
C08p49110 Brassica napus HOM05D000129 ORTHO05D000997 3.1e-21 105.5 60 81.7
BolC8t52446H Brassica oleracea HOM05D000129 ORTHO05D000997 3.1e-21 105.5 60 81.7
BraA09t41862Z Brassica rapa HOM05D000129 ORTHO05D000997 3.1e-21 105.5 60 81.7
CsaV3_2G026010 Cucumis sativus L. HOM05D000129 ORTHO05D000997 3.1e-21 105.5 94 62.8
Psat5g037840 Pisum sativum HOM05D000129 ORTHO05D000997 4.1e-21 105.1 88 62.5
SGA_v2.0_scaffold152G36819 Striga asiatica HOM05D000129 ORTHO05D000997 4.1e-21 105.1 61 78.7
Cc10_g05070 Coffea canephora HOM05D000129 ORTHO05D000997 5.4e-21 104.8 73 71.2
Medtr3g103270 Medicago truncatula HOM05D000129 ORTHO05D000997 7.0e-21 104.4 88 61.4
AUR62036019 Chenopodium quinoa HOM05D000129 ORTHO05D000997 1.2e-20 103.6 59 78.0
Migut.N02792 Erythranthe guttata HOM05D000129 ORTHO05D000997 7.7e-20 100.9 60 78.3
DCAR_027593 Daucus carota HOM05D000129 ORTHO05D000997 1.3e-19 100.1 54 85.2
MELO3C010795.2 Cucumis melo HOM05D000129 ORTHO05D000997 1.5e-18 96.7 106 54.7
SalBow2G1224 Salvia bowleyana HOM05D000129 ORTHO05D000997 2.1e-17 92.8 55 80.0
AUR62037950 Chenopodium quinoa HOM05D000129 ORTHO05D000997 1.0e-16 90.5 54 75.9
SMO268G0052 Selaginella moellendorffii HOM05D000129 ORTHO05D000997 6.8e-16 87.8 60 65.0
MCO01G703 Micromonas commoda HOM05D000129 ORTHO05D000997 1.3e-14 83.6 55 65.5
Cre11.g467795 Chlamydomonas reinhardtii HOM05D000129 ORTHO05D000997 1.8e-13 79.7 55 65.5
CBR_g19685 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-13 78.6 90 46.7
PRCOL_00006536 Prasinoderma coloniale HOM05D000129 ORTHO05D000997 7.5e-07 57.8 59 45.8


User provided reference genes

Program Settings