Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.8e-79 297.7 149 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.7e-45 185.7 105 88.6
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.7e-45 185.7 105 88.6
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.3e-43 177.6 105 81.9
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-42 174.5 105 80.0
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.2e-40 170.2 105 79.0
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.5e-40 169.9 105 80.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.0e-40 169.5 105 80.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.6e-40 169.1 106 80.2
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.8e-40 167.9 102 80.4
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 9.9e-40 167.2 105 76.2
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.7e-39 166.4 102 80.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.2e-39 166.0 105 77.1
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.9e-39 165.6 102 81.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 4.9e-39 164.9 105 75.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 4.9e-39 164.9 102 78.4
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.4e-39 164.5 102 78.4
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 8.3e-39 164.1 105 77.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.1e-38 163.7 105 75.2
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.1e-38 163.7 102 76.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.1e-38 163.7 102 77.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.1e-38 163.7 102 79.4
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.9e-38 162.9 105 76.2
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 3.2e-38 162.2 122 68.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.2e-38 162.2 99 78.8
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 3.2e-38 162.2 105 74.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.1e-38 161.8 102 75.5
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.1e-38 161.8 102 77.5
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.1e-38 161.8 102 76.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 5.4e-38 161.4 105 74.3
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 5.4e-38 161.4 105 74.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.4e-38 161.4 105 74.3
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.4e-38 161.4 105 74.3
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 7.1e-38 161.0 102 77.5
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 9.2e-38 160.6 115 67.8
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.2e-37 160.2 102 73.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.6e-37 159.8 99 79.8
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.6e-37 159.8 102 74.5
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.1e-37 159.5 105 74.3
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.1e-37 159.5 105 72.4
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.1e-37 159.5 101 79.2
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.7e-37 159.1 102 73.5
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.7e-37 159.1 105 72.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.5e-37 158.7 105 73.3
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 4.6e-37 158.3 102 71.6
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.6e-37 158.3 105 70.5
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.6e-37 158.3 105 70.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.6e-37 158.3 105 72.4
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 4.6e-37 158.3 103 72.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 4.6e-37 158.3 105 71.4
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 4.6e-37 158.3 99 78.8
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.0e-37 157.9 105 72.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 6.0e-37 157.9 120 66.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 7.8e-37 157.5 105 71.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 7.8e-37 157.5 99 78.8
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.0e-36 157.1 99 74.7
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.0e-36 157.1 105 73.3
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.3e-36 156.8 126 61.9
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-36 156.8 105 71.4
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.3e-36 156.8 99 75.8
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.7e-36 156.4 102 71.6
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.3e-36 156.0 105 69.5
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 2.3e-36 156.0 105 69.5
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 3.0e-36 155.6 105 70.5
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 3.0e-36 155.6 105 67.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.0e-36 155.6 99 75.8
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.9e-36 155.2 105 69.5
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.9e-36 155.2 99 75.8
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 5.1e-36 154.8 126 59.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 5.1e-36 154.8 99 74.7
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.1e-36 154.8 102 73.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.1e-35 153.7 105 65.7
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.1e-35 153.7 105 66.7
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.5e-35 153.3 105 70.5
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.5e-35 153.3 105 66.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.5e-35 153.3 96 76.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.5e-35 152.5 102 70.6
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.5e-35 152.5 102 70.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.5e-35 152.5 105 69.5
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.5e-35 152.5 105 66.7
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.3e-35 152.1 113 63.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.3e-35 152.1 105 68.6
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.3e-35 152.1 105 70.5
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.3e-35 151.8 105 69.5
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 5.6e-35 151.4 115 61.7
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 7.3e-35 151.0 88 83.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.3e-35 151.0 99 69.7
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-34 150.2 106 70.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.6e-34 149.8 105 67.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.6e-34 149.8 105 67.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 2.1e-34 149.4 105 67.6
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.1e-34 149.4 118 63.6
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.6e-34 148.7 105 63.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.7e-34 148.3 99 68.7
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 6.2e-34 147.9 99 70.7
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 8.1e-34 147.5 102 66.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 8.1e-34 147.5 116 60.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.1e-33 147.1 102 68.6
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.1e-33 147.1 102 68.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.1e-33 147.1 102 70.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.4e-33 146.7 105 64.8
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.4e-33 146.7 105 69.5
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-33 146.0 105 67.6
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.1e-33 145.6 105 61.9
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.0e-33 145.2 105 61.9
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 5.2e-33 144.8 105 67.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.8e-33 144.4 102 65.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 6.8e-33 144.4 116 59.5
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.9e-33 144.1 86 83.7
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 8.9e-33 144.1 102 65.7
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 8.9e-33 144.1 105 64.8
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 8.9e-33 144.1 105 65.7
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.2e-32 143.7 102 67.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.2e-32 143.7 105 64.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.6e-32 142.5 105 63.8
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.6e-32 142.5 103 64.1
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.4e-32 142.1 105 65.7
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.4e-32 142.1 105 65.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 3.4e-32 142.1 102 63.7
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.4e-32 141.7 102 65.7
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.4e-32 141.7 105 63.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 9.9e-32 140.6 102 63.7
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.7e-31 139.8 105 61.9
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.9e-31 139.0 105 61.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.8e-31 138.7 102 64.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 8.4e-31 137.5 105 62.9
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 8.4e-31 137.5 105 62.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.4e-30 136.7 102 62.7
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.4e-30 136.7 106 61.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 4.1e-30 135.2 117 59.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.1e-30 135.2 106 60.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.1e-30 135.2 106 60.4
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 9.2e-30 134.0 106 60.4
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-29 133.3 105 60.0
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 2.7e-29 132.5 83 74.7
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.8e-29 131.0 99 65.7
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 7.8e-29 131.0 98 61.2
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.7e-28 129.8 99 60.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.3e-28 129.4 99 61.6
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.1e-28 128.3 99 64.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 5.1e-28 128.3 103 57.3
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.3e-27 125.2 106 55.7
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 5.6e-27 124.8 97 62.9
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.0e-24 116.3 102 57.8
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.3e-23 113.6 102 53.9
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.2e-23 112.8 82 69.5
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 6.4e-23 111.3 105 51.4
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.8e-21 104.4 58 86.2
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.1e-19 100.5 103 50.5
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.6e-16 87.8 70 61.4
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 3.2e-14 82.4 87 42.5
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.6e-13 78.6 95 41.1
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.0e-13 78.2 76 46.1
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.3e-12 76.3 90 36.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.9e-12 75.5 104 36.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.5e-08 63.5 63 49.2


User provided reference genes

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