Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 0.0e+00 1244.6 619 100.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 0.0e+00 1237.2 619 99.4
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.6e-296 1021.5 619 82.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 7.2e-294 1013.4 632 80.5
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.3e-276 955.3 657 75.8
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.7e-271 939.1 619 76.7
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 9.8e-267 923.3 619 73.7
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.2e-266 922.2 619 74.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.4e-265 919.5 619 73.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 2.4e-265 918.7 619 73.0
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 7.0e-265 917.1 619 72.7
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 4.2e-262 907.9 624 72.9
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.5e-259 899.4 619 71.4
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.1e-257 893.3 619 72.1
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 4.1e-257 891.3 621 70.7
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.0e-255 886.7 525 83.8
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.8e-252 875.9 619 69.3
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 2.2e-250 869.0 622 68.6
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.4e-249 866.3 626 69.2
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 7.0e-249 864.0 621 70.5
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.7e-248 862.1 619 69.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.6e-247 857.4 622 68.3
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.1e-246 856.7 619 67.7
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.1e-246 856.7 622 68.2
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.3e-246 854.7 622 67.7
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 5.6e-246 854.4 619 69.1
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 9.5e-246 853.6 626 69.8
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.6e-243 845.5 619 68.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.5e-243 844.0 625 68.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.4e-241 839.0 628 68.2
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 6.6e-239 830.9 626 67.4
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 9.5e-238 827.0 622 65.8
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.6e-237 825.1 623 65.8
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 2.0e-235 819.3 622 66.4
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 4.4e-235 818.1 584 71.2
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.1e-233 813.5 623 65.8
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.1e-233 811.6 622 65.9
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.1e-232 809.3 624 64.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.0e-231 807.0 655 62.6
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 9.5e-230 800.4 619 65.1
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 6.2e-229 797.7 624 64.7
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 4.0e-228 795.0 626 64.9
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 2.6e-227 792.3 623 64.0
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.3e-226 790.0 622 63.7
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.7e-226 789.6 628 62.9
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.9e-225 786.2 628 62.6
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 5.4e-225 784.6 623 63.4
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 3.0e-223 778.9 602 65.3
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 8.6e-223 777.3 624 62.7
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.1e-222 776.9 625 62.4
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.5e-222 776.5 628 63.7
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.1e-221 772.7 624 62.3
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 3.6e-221 771.9 619 62.7
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 4.0e-220 768.5 625 61.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 5.2e-220 768.1 624 63.0
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 5.2e-220 768.1 626 62.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.5e-219 766.5 622 62.4
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.0e-219 766.1 621 61.8
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 4.4e-219 765.0 623 62.4
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 7.6e-219 764.2 626 62.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-218 763.5 622 62.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.2e-218 762.7 622 61.9
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.8e-218 761.9 622 61.4
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.1e-217 760.4 628 60.8
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 9.3e-217 757.3 625 61.9
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 9.3e-217 757.3 627 62.2
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.6e-216 756.5 625 61.0
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.5e-216 755.4 621 60.7
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 7.8e-216 754.2 638 60.3
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.3e-215 753.4 621 61.4
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.3e-215 753.4 621 61.4
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 2.3e-215 752.7 624 61.1
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.0e-215 752.3 625 61.0
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 3.0e-215 752.3 624 60.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.9e-215 751.9 624 60.7
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.9e-215 751.9 624 62.2
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.9e-214 749.6 621 61.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 9.6e-214 747.3 621 60.7
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.3e-213 746.9 633 61.6
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.1e-213 746.1 625 60.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.8e-213 745.7 621 60.9
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 6.2e-213 744.6 621 61.0
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.0e-211 739.6 614 62.1
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.8e-211 738.0 623 61.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.9e-210 735.7 623 60.5
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.8e-210 735.3 619 62.0
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 4.9e-210 734.9 630 60.0
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.2e-209 732.3 693 56.6
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 3.9e-207 725.3 628 59.9
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.6e-205 718.8 661 57.0
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.1e-204 717.2 627 60.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.5e-203 713.4 687 55.3
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 5.8e-203 711.4 567 62.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.9e-202 709.1 529 65.8
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.7e-199 698.0 617 58.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.3e-197 693.7 634 55.7
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.5e-193 679.5 612 57.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 8.7e-191 671.0 622 55.9
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.1e-182 644.0 624 54.0
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.2e-169 598.2 405 78.0
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 4.1e-164 582.4 627 50.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.6e-163 579.7 645 49.1
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.6e-163 579.7 645 49.1
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.7e-162 577.0 641 49.3
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.8e-159 564.7 408 73.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 8.8e-159 564.7 620 49.8
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.8e-157 559.7 488 60.9
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-153 547.4 626 48.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 2.3e-146 523.5 660 45.5
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.4e-143 514.2 635 44.4
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.7e-141 507.3 533 51.0
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.4e-134 483.0 386 61.4
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 6.6e-130 468.8 406 58.1
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.1e-124 449.5 592 42.7
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.2e-115 421.4 468 46.8
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.8e-82 311.2 751 30.5
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.7e-75 287.3 416 38.9
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.2e-67 261.9 641 32.0
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 3.6e-67 260.4 270 52.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.7e-64 251.5 130 93.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-63 248.8 248 50.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 3.2e-60 237.3 215 55.8
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 8.0e-51 206.1 164 62.2
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 2.0e-49 201.4 389 33.4
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.1e-43 181.4 143 62.2
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.1e-39 167.2 154 59.7
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.1e-36 159.1 243 42.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.9e-36 158.3 518 27.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.5e-33 148.7 164 48.2
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.9e-29 134.4 103 63.1
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.9e-29 134.4 150 50.0
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 8.6e-29 132.9 124 55.6
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 7.2e-28 129.8 148 48.0
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-27 127.9 95 70.5
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-21 109.4 123 51.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.6e-17 94.7 155 41.9
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 9.8e-17 92.8 81 59.3
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.4e-16 90.1 65 63.1
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.9e-15 88.6 101 46.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 9.2e-15 86.3 68 60.3
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.2e-14 85.9 65 63.1
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-11 75.9 53 67.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 6.2e-11 73.6 76 48.7
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 3.4e-09 67.8 54 57.4
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 5.8e-09 67.0 65 52.3
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.2e-08 65.1 51 58.8
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.2e-08 65.1 49 63.3
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 6.4e-08 63.5 52 57.7
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 3.2e-07 61.2 45 68.9
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 4.1e-07 60.8 41 63.4
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 7.0e-07 60.1 34 76.5
Lsat_1_v5_gn_4_100620 Lactuca sativa HOM05D001733 ORTHO05D001882 2.7e-06 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 3.5e-06 57.8 130 36.2


User provided reference genes

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