Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 6.0e-68 260.8 137 100.0
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 7.9e-60 233.8 139 87.8
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 5.5e-29 131.3 130 56.2
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 2.3e-27 125.9 142 56.3
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 2.4e-24 115.9 117 57.3
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 2.4e-24 115.9 137 48.2
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 3.5e-23 112.1 115 53.0
Rhsim04G0066600 Rhododendron simsii HOM05D006722 ORTHO05D007944 4.5e-23 111.7 124 51.6
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.3e-22 110.2 141 48.9
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 8.5e-22 107.5 143 46.9
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 9.4e-21 104.0 130 48.5
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 1.2e-20 103.6 138 44.9
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 3.6e-20 102.1 131 41.2
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 4.0e-19 98.6 126 43.7
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 6.8e-19 97.8 87 58.6
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 2.0e-18 96.3 108 47.2
Cc05_g06730 Coffea canephora HOM05D006722 ORTHO05D007944 1.3e-17 93.6 129 42.6
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 1.7e-17 93.2 141 42.6
PGSC0003DMG400018315 Solanum tuberosum HOM05D006722 ORTHO05D007944 1.7e-17 93.2 112 45.5
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 2.2e-17 92.8 136 46.3
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 3.7e-17 92.0 109 50.5
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 6.3e-17 91.3 128 45.3
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 6.3e-17 91.3 116 44.8
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.4e-16 90.1 134 44.8
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.4e-16 90.1 135 45.2
Nitab4.5_0005380g0010 Nicotiana tabacum HOM05D006722 ORTHO05D007944 1.8e-16 89.7 123 39.0
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 2.4e-16 89.4 139 42.4
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 4.1e-16 88.6 121 44.6
Actinidia11069 Actinidia chinensis HOM05D006722 ORTHO05D007944 7.0e-16 87.8 110 50.0
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 9.1e-16 87.4 136 42.6
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 2.7e-15 85.9 130 42.3
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 3.5e-15 85.5 126 42.9
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 4.5e-15 85.1 131 43.5
TAR141G0004 Trochodendron aralioides HOM05D006722 ORTHO05D007944 4.5e-15 85.1 163 38.0
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.0e-14 84.0 87 56.3
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 2.2e-14 82.8 101 47.5
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 5.0e-14 81.6 133 42.9
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 1.9e-13 79.7 141 39.7
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 3.2e-13 79.0 138 41.3
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 4.2e-13 78.6 134 41.0
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 5.5e-13 78.2 135 40.7
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 5.5e-13 78.2 135 40.7
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 7.2e-13 77.8 125 40.0
Actinidia11070 Actinidia chinensis HOM05D006722 ORTHO05D007944 6.1e-12 74.7 61 62.3
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 6.1e-12 74.7 87 47.1
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 8.0e-12 74.3 132 39.4
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 8.0e-12 74.3 131 41.2
ATR0693G370 Amborella trichopoda HOM05D041462 ORTHO05D007944 1.4e-11 73.6 89 53.9
Medtr2g090185 Medicago truncatula HOM05D006722 ORTHO05D007944 1.4e-11 73.6 103 47.6
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 1.8e-11 73.2 133 39.8
Manes.13G149300 Manihot esculenta HOM05D006722 ORTHO05D007944 2.3e-11 72.8 153 38.6
Eucgr.A01793 Eucalyptus grandis HOM05D006722 ORTHO05D007944 3.0e-11 72.4 125 36.8
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 4.0e-11 72.0 137 37.2
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 4.0e-11 72.0 99 47.5
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 5.2e-11 71.6 108 49.1
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 8.8e-11 70.9 84 50.0
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 2.0e-10 69.7 95 48.4
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 2.6e-10 69.3 95 48.4
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 2.6e-10 69.3 104 43.3
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 3.4e-10 68.9 114 44.7
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 3.4e-10 68.9 114 44.7
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 3.4e-10 68.9 114 44.7
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 4.4e-10 68.6 95 47.4
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 4.4e-10 68.6 101 44.6
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 9.8e-10 67.4 91 46.2
ClCG02G017440 Citrullus lanatus HOM05D006722 ORTHO05D007944 1.7e-09 66.6 130 36.9
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 1.7e-09 66.6 95 46.3
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 2.2e-09 66.2 119 37.0
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 2.8e-09 65.9 103 44.7
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 4.8e-09 65.1 103 43.7
Phvul.011G113200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 8.3e-09 64.3 161 34.8
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.1e-08 63.9 136 37.5
Glyma.06G296300 Glycine max HOM05D006722 ORTHO05D007944 1.4e-08 63.5 110 40.9
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 1.4e-08 63.5 115 39.1
Gohir.D06G117266 Gossypium hirsutum HOM05D006722 ORTHO05D007944 2.4e-08 62.8 136 37.5
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 3.1e-08 62.4 92 46.7
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 4.1e-08 62.0 103 45.6
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 5.4e-08 61.6 103 45.6
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 7.0e-08 61.2 134 38.8
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 7.0e-08 61.2 134 38.8
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 7.0e-08 61.2 134 38.8
Hma1.2p1_0875F.1_g231430 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 1.2e-07 60.5 97 46.4
Gohir.D01G197650 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.6e-07 60.1 136 36.8
QL08p037794 Quercus lobata HOM05D006722 ORTHO05D007944 2.0e-07 59.7 132 37.1
Psat5g270720 Pisum sativum HOM05D006722 ORTHO05D007944 2.7e-07 59.3 105 42.9
Actinidia01434 Actinidia chinensis HOM05D006722 ORTHO05D054353 7.7e-07 57.8 66 50.0
Lalb_Chr19g0135361 Lupinus albus HOM05D006722 ORTHO05D007944 7.7e-07 57.8 111 39.6
HPP92_001821 Vanilla planifolia HOM05D026263 ORTHO05D007944 2.3e-06 56.2 89 44.9
Os07g0565800 Oryza sativa ssp. japonica HOM05D026263 ORTHO05D007944 3.8e-06 55.5 90 41.1
VMungo1080G0484 Vigna mungo HOM05D006722 ORTHO05D007944 6.6e-06 54.7 108 38.0
Ca_01515_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 8.6e-06 54.3 141 33.3
Gohir.D12G141100 Gossypium hirsutum HOM05D006722 ORTHO05D007944 8.6e-06 54.3 96 42.7


User provided reference genes

Program Settings