Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029282 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D110157 1.5e-42 175.6 81 100.0
Glyma.08G075200 Glycine max HOM05D000026 ORTHO05D000094 3.6e-12 74.7 45 75.6
VMungo0251G1293 Vigna mungo HOM05D000026 ORTHO05D000094 1.1e-11 73.2 45 73.3
GSVIVG01029708001 Vitis vinifera HOM05D000026 ORTHO05D000094 1.1e-11 73.2 45 73.3
Thecc.02G143800 Theobroma cacao HOM05D000026 ORTHO05D000094 1.8e-11 72.4 45 73.3
Ciclev10003226m.g Citrus clementina HOM05D000026 ORTHO05D000094 3.1e-11 71.6 45 73.3
DCAR_001803 Daucus carota HOM05D000026 ORTHO05D000094 3.1e-11 71.6 45 73.3
QL08p030827 Quercus lobata HOM05D000026 ORTHO05D000094 3.1e-11 71.6 45 71.1
QL11p019290 Quercus lobata HOM05D000026 ORTHO05D000094 3.1e-11 71.6 45 71.1
PSO210G5122 Papaver somniferum HOM05D000026 ORTHO05D000094 1.2e-10 69.7 45 68.9
Actinidia00247 Actinidia chinensis HOM05D000026 ORTHO05D000094 1.5e-10 69.3 45 66.7
PSO170G1286 Papaver somniferum HOM05D000026 ORTHO05D000094 2.0e-10 68.9 45 66.7
Aqoxy4G02188 Aquilegia oxysepala HOM05D000026 ORTHO05D000094 3.4e-10 68.2 44 70.5
MBI04_g08951_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D000094 5.8e-10 67.4 45 62.2
Gohir.D02G194800 Gossypium hirsutum HOM05D000026 ORTHO05D000094 7.5e-10 67.0 45 66.7
Gorai.005G217600 Gossypium raimondii HOM05D000026 ORTHO05D000094 7.5e-10 67.0 45 66.7
Hma1.2p1_0217F.1_g091620 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 7.5e-10 67.0 45 66.7
Lj9C318T6 Lonicera japonica HOM05D000026 ORTHO05D000094 9.9e-10 66.6 44 68.2
CANSAT56G0772 Cannabis sativa HOM05D000026 ORTHO05D000094 5.4e-08 60.8 44 61.4
ATR1120G140 Amborella trichopoda HOM05D000026 ORTHO05D000094 7.1e-08 60.5 45 57.8
ATR0665G501 Amborella trichopoda HOM05D000026 ORTHO05D000094 1.6e-07 59.3 44 59.1
Ciclev10003932m.g Citrus clementina HOM05D000026 ORTHO05D000094 1.6e-07 59.3 44 61.4
SEGI_40383 Sequoiadendron giganteum HOM05D000026 ORTHO05D000094 2.7e-07 58.5 45 57.8
Nn2g13451 Nelumbo nucifera HOM05D000026 ORTHO05D000094 4.6e-07 57.8 66 42.4
Actinidia23919 Actinidia chinensis HOM05D000026 ORTHO05D000094 7.8e-07 57.0 45 57.8
Nn2g11196 Nelumbo nucifera HOM05D000026 ORTHO05D000094 1.0e-06 56.6 45 55.6
Glyma.18G185500 Glycine max HOM05D000026 ORTHO05D000094 1.3e-06 56.2 45 60.0
Dinv34366 Davidia involucrata HOM05D000026 ORTHO05D000094 2.3e-06 55.5 45 51.1
MD12G1147700 Malus domestica HOM05D000026 ORTHO05D000094 2.3e-06 55.5 44 54.5
Phvul.008G117700 Phaseolus vulgaris HOM05D000026 ORTHO05D000094 2.3e-06 55.5 45 57.8
VMungo1383G1488 Vigna mungo HOM05D000026 ORTHO05D000094 2.3e-06 55.5 45 57.8
CsaV3_3G034690 Cucumis sativus L. HOM05D000026 ORTHO05D000094 3.0e-06 55.1 65 40.0
Dinv03369 Davidia involucrata HOM05D000026 ORTHO05D000094 3.0e-06 55.1 45 57.8
Dinv06760 Davidia involucrata HOM05D000026 ORTHO05D000094 3.0e-06 55.1 45 57.8
Mapoly0126s0007 Marchantia polymorpha HOM05D000026 ORTHO05D001292 3.0e-06 55.1 65 43.1
Lalb_Chr13g0297621 Lupinus albus HOM05D000026 ORTHO05D000094 3.9e-06 54.7 44 52.3
MBI05_g35636_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D000094 3.9e-06 54.7 45 51.1
SEGI_19645 Sequoiadendron giganteum HOM05D000026 ORTHO05D000094 3.9e-06 54.7 45 46.7
TPR.G22963 Trifolium pratense HOM05D000026 ORTHO05D000094 3.9e-06 54.7 45 55.6
vmacro14555 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 3.9e-06 54.7 45 55.6
ClCG10G021350 Citrullus lanatus HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 53.3
MELO3C009237.2 Cucumis melo HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 53.3
Dinv34368 Davidia involucrata HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 51.1
Glyma.07G135600 Glycine max HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 55.6
Nn2g13442 Nelumbo nucifera HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 53.3
SEGI_36879 Sequoiadendron giganteum HOM05D000026 ORTHO05D000094 5.1e-06 54.3 45 46.7
TAR365G0086 Trochodendron aralioides HOM05D000026 ORTHO05D000094 5.1e-06 54.3 44 56.8
TAR365G1245 Trochodendron aralioides HOM05D000026 ORTHO05D000094 5.1e-06 54.3 44 56.8
Actinidia34425 Actinidia chinensis HOM05D000026 ORTHO05D000094 6.6e-06 53.9 45 53.3
ATR0665G510 Amborella trichopoda HOM05D000026 ORTHO05D000094 6.6e-06 53.9 45 55.6
Hma1.2p1_0766F.1_g215360 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.6e-06 53.9 66 37.9
Hma1.2p1_1082F.1_g255130 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.6e-06 53.9 66 37.9
Lsat_1_v5_gn_7_115040 Lactuca sativa HOM05D000026 ORTHO05D001292 6.6e-06 53.9 66 43.9
Medtr7g063030 Medicago truncatula HOM05D000026 ORTHO05D000094 6.6e-06 53.9 45 55.6
Psat3g136680 Pisum sativum HOM05D000026 ORTHO05D000094 6.6e-06 53.9 45 55.6
Solyc09g011980.1 Solanum lycopersicum HOM05D000026 ORTHO05D000094 6.6e-06 53.9 45 51.1
Actinidia34424 Actinidia chinensis HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 55.6
EL10Ac7g16518 Beta vulgaris HOM05D000026 ORTHO05D001292 8.6e-06 53.5 51 51.0
CiPaw.01G290100 Carya illinoinensis HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 57.8
CsaV3_3G034680 Cucumis sativus L. HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 53.3
Duzib114G0888 Durio zibethinus HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 53.3
Manes.10G027700 Manihot esculenta HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 55.6
Medtr5g035910 Medicago truncatula HOM05D000026 ORTHO05D000094 8.6e-06 53.5 44 56.8
Sed0001598 Sechium edule HOM05D000026 ORTHO05D000094 8.6e-06 53.5 45 51.1
Sed0019812 Sechium edule HOM05D000026 ORTHO05D000094 8.6e-06 53.5 44 54.5
TWI53G0934 Tripterygium wilfordii HOM05D000026 ORTHO05D000094 8.6e-06 53.5 66 36.4


User provided reference genes

Program Settings