Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.6e-141 505.4 252 100.0
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 4.6e-138 494.6 252 98.4
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 5.0e-129 464.5 252 92.9
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 5.8e-117 424.5 252 86.9
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 4.2e-99 365.2 252 74.6
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 2.3e-97 359.4 249 74.3
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 8.7e-97 357.5 254 71.3
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 5.5e-91 338.2 274 65.7
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.5e-85 320.1 257 63.0
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 5.5e-83 311.6 247 64.8
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 9.3e-83 310.8 246 65.4
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 7.9e-82 307.8 250 64.8
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 1.0e-81 307.4 251 63.3
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.8e-81 306.6 247 64.4
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 1.1e-80 303.9 258 62.4
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 1.1e-80 303.9 247 63.6
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 1.9e-80 303.1 247 64.0
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 2.5e-80 302.8 186 79.0
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 2.5e-80 302.8 248 64.9
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 4.3e-80 302.0 250 64.8
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 1.3e-79 300.4 247 61.9
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 1.3e-79 300.4 251 62.9
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 2.2e-79 299.7 247 64.0
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 2.8e-79 299.3 203 72.9
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 3.7e-79 298.9 257 60.3
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 3.7e-79 298.9 248 64.1
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 6.3e-79 298.1 252 61.9
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 8.2e-79 297.7 248 63.3
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 1.2e-77 293.9 252 60.7
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.6e-77 292.7 271 59.4
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 4.5e-77 292.0 248 62.1
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 5.9e-77 291.6 253 60.5
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 7.7e-77 291.2 251 62.5
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 1.7e-76 290.0 251 61.4
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 1.7e-76 290.0 249 62.2
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 5.0e-76 288.5 250 60.0
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 8.5e-76 287.7 214 68.7
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 8.5e-76 287.7 229 65.9
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 1.4e-75 287.0 218 69.7
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.4e-75 287.0 255 58.4
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 2.5e-75 286.2 246 60.6
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 7.2e-75 284.6 257 60.7
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 9.4e-75 284.3 203 70.4
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 9.4e-75 284.3 248 62.9
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 6.1e-74 281.6 202 69.3
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 6.1e-74 281.6 257 59.9
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 7.9e-74 281.2 254 57.9
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 1.0e-73 280.8 249 59.0
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 1.4e-73 280.4 253 58.9
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.8e-73 280.0 219 65.3
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 3.0e-73 279.3 188 72.9
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.9e-73 278.9 219 64.8
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 3.9e-73 278.9 249 59.0
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 3.9e-73 278.9 191 73.3
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.1e-72 277.3 250 60.4
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.0e-72 276.6 219 64.8
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 2.5e-72 276.2 246 56.9
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 2.5e-72 276.2 187 71.1
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 2.5e-72 276.2 228 63.2
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 3.3e-72 275.8 189 70.9
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 3.3e-72 275.8 230 59.1
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.3e-72 275.8 248 59.3
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 9.7e-72 274.2 242 60.7
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 9.7e-72 274.2 255 58.4
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 1.7e-71 273.5 248 58.1
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 2.8e-71 272.7 254 58.3
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 2.8e-71 272.7 251 60.2
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 4.8e-71 271.9 258 56.6
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 1.8e-70 270.0 172 80.2
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.6e-69 266.2 235 57.9
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 3.4e-69 265.8 234 60.3
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 5.9e-69 265.0 224 62.5
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 7.7e-69 264.6 237 58.6
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 3.6e-66 255.8 203 63.5
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 1.1e-64 250.8 251 55.8
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 3.3e-64 249.2 214 57.5
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.8e-62 243.4 253 51.4
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 3.5e-61 239.2 191 60.2
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 1.3e-60 237.3 227 55.5
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 6.5e-60 235.0 229 55.9
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 8.5e-60 234.6 191 62.8
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 1.9e-59 233.4 224 55.8
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 2.1e-58 229.9 241 52.7
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 2.7e-58 229.6 237 52.3
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 2.7e-58 229.6 217 55.8
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 1.4e-57 227.3 237 52.3
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 3.0e-57 226.1 222 55.0
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 8.8e-57 224.6 238 50.8
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 8.8e-57 224.6 238 50.8
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 1.5e-56 223.8 144 73.6
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 2.6e-56 223.0 237 51.9
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 7.4e-56 221.5 236 51.7
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 7.4e-56 221.5 150 72.0
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 5.3e-54 215.3 192 58.9
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.3e-52 210.7 180 55.6
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 1.1e-51 207.6 244 46.3
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.2e-50 204.1 245 47.8
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 1.0e-49 201.1 180 52.8
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 6.8e-49 198.4 182 53.8
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.0e-45 186.8 257 46.7
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 2.2e-44 183.3 185 53.0
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 5.0e-44 182.2 182 47.8
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 3.2e-43 179.5 190 47.4
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 1.6e-42 177.2 224 44.2
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 8.0e-42 174.9 194 46.4
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 1.4e-38 164.1 154 57.1
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 8.6e-36 154.8 263 37.3
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 1.2e-32 144.4 148 54.7
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 3.4e-32 142.9 192 46.4
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 4.5e-29 132.5 87 74.7
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 9.5e-27 124.8 182 40.1
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 1.2e-24 117.9 86 65.1
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 8.6e-20 101.7 161 38.5
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 1.2e-16 91.3 67 64.2
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.3e-15 87.8 96 43.8
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 6.4e-15 85.5 127 37.8
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 7.3e-11 72.0 76 47.4
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 5.8e-08 62.4 91 40.7
Cre10.g463800 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.4e-06 57.8 133 33.1
HPP92_026872 Vanilla planifolia HOM05D007174 ORTHO05D009061 1.9e-06 57.4 101 35.6
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 3.2e-06 56.6 62 50.0


User provided reference genes

Program Settings