Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.8e-221 772.7 537 100.0
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.4e-136 490.0 391 100.0
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.8e-128 463.8 535 72.5
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.6e-100 370.9 486 68.9
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 8.0e-100 368.6 447 68.2
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 3.7e-97 359.8 444 69.8
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.1e-96 358.2 507 64.5
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.4e-96 357.8 473 68.3
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 5.4e-96 355.9 490 68.2
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 7.0e-96 355.5 519 64.4
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.7e-95 353.6 444 62.8
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.3e-94 351.3 509 66.0
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 2.3e-94 350.5 449 70.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.5e-93 347.1 513 63.4
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.3e-93 346.7 428 64.7
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.1e-91 341.7 428 64.3
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 4.9e-89 332.8 439 69.2
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 9.2e-88 328.6 431 62.6
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 2.7e-87 327.0 453 66.9
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 1.7e-86 324.3 449 66.8
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.1e-84 317.4 442 67.9
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.0e-82 310.8 437 67.0
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 3.4e-82 310.1 502 61.0
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 5.8e-82 309.3 504 61.7
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.9e-81 307.0 451 66.5
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 2.9e-81 307.0 454 62.8
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 6.4e-81 305.8 437 66.8
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.1e-80 305.1 486 51.6
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.4e-80 304.7 496 51.4
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 4.1e-80 303.1 480 55.4
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 7.8e-79 298.9 412 68.9
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.9e-78 296.6 454 61.9
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.1e-77 295.0 437 67.0
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 3.3e-77 293.5 453 62.5
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 9.6e-77 292.0 440 67.7
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.2e-76 291.6 437 66.8
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.8e-75 287.7 487 57.9
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 2.4e-75 287.3 441 54.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 3.1e-75 287.0 440 65.0
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 1.3e-73 281.6 449 59.9
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 5.4e-72 276.2 440 64.3
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 6.0e-71 272.7 448 60.5
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 6.0e-71 272.7 493 56.0
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 1.0e-70 271.9 486 56.0
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.7e-70 271.2 489 56.4
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 6.6e-70 269.2 421 52.0
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 1.5e-69 268.1 434 59.4
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 5.6e-69 266.2 477 54.9
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.8e-68 263.8 486 54.5
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 1.4e-67 261.5 503 58.3
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.4e-67 260.8 370 71.4
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 9.0e-67 258.8 476 56.7
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 1.2e-66 258.5 372 72.8
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.4e-64 251.5 193 62.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.4e-64 250.8 373 72.4
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 9.3e-64 248.8 503 52.1
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 1.6e-63 248.1 447 58.6
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 6.0e-63 246.1 447 58.4
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 1.8e-62 244.6 443 57.3
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 6.7e-62 242.7 180 62.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.5e-61 241.5 384 65.1
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 3.6e-60 236.9 435 58.2
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.8e-57 226.9 346 74.6
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 4.6e-55 219.9 177 56.5
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 4.8e-52 209.9 434 56.0
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 1.4e-48 198.4 362 69.1
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.6e-47 194.9 435 45.7
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 4.1e-35 153.7 126 60.3
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 4.2e-32 143.7 383 61.4
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 6.3e-20 103.2 130 43.8
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.2e-17 94.7 89 56.2
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.7e-12 78.6 76 47.4
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 3.7e-12 77.4 197 28.9
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.8e-12 77.0 201 29.9
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 4.8e-12 77.0 201 29.9
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 4.8e-12 77.0 201 29.4
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 6.3e-12 76.6 201 29.4
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 8.2e-12 76.3 203 29.6
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 8.2e-12 76.3 201 29.4
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.1e-11 75.9 76 44.7
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.1e-11 75.9 201 29.4
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.1e-11 75.9 191 31.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.4e-11 75.5 198 30.8
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 3.1e-11 74.3 203 29.1
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 3.1e-11 74.3 201 30.3
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 4.1e-11 73.9 131 37.4
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.1e-11 73.9 201 29.4
Hund24443 Selenicereus undatus HOM05D007897 ORTHO05D010061 4.1e-11 73.9 139 36.7
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 5.3e-11 73.6 201 29.4
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 5.3e-11 73.6 119 37.8
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 9.1e-11 72.8 201 28.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.1e-11 72.8 201 29.4
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 1.2e-10 72.4 192 30.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 1.2e-10 72.4 201 30.3
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.6e-10 72.0 201 29.4
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.6e-10 72.0 201 29.4
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 2.0e-10 71.6 198 29.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.0e-10 71.6 419 33.9
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 2.7e-10 71.2 201 28.4
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.5e-10 70.9 104 38.5
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 4.5e-10 70.5 201 28.9
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 4.5e-10 70.5 201 30.3
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 4.5e-10 70.5 188 29.8
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 5.9e-10 70.1 205 26.3
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 5.9e-10 70.1 196 29.6
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 5.9e-10 70.1 75 45.3
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.9e-10 70.1 206 26.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 7.7e-10 69.7 198 30.8
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 7.7e-10 69.7 193 29.5
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 7.7e-10 69.7 193 29.5
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.0e-09 69.3 202 30.2
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.0e-09 69.3 201 30.8
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.0e-09 69.3 201 29.9
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.0e-09 69.3 203 29.6
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.0e-09 69.3 200 29.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.3e-09 68.9 201 27.9
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.3e-09 68.9 201 26.9
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.7e-09 68.6 203 28.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.7e-09 68.6 202 29.7
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 1.7e-09 68.6 196 28.6
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.2e-09 68.2 203 28.6
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.9e-09 67.8 49 57.1
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 2.9e-09 67.8 196 29.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 3.8e-09 67.4 203 28.6
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 3.8e-09 67.4 203 28.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 3.8e-09 67.4 203 28.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 3.8e-09 67.4 201 26.9
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 3.8e-09 67.4 198 28.8
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 3.8e-09 67.4 201 27.4
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.8e-09 67.4 203 29.1
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.0e-09 67.0 201 26.9
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 5.0e-09 67.0 201 27.4
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.0e-09 67.0 201 27.4
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 6.5e-09 66.6 201 28.9
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.5e-09 66.6 201 26.9
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 6.5e-09 66.6 201 27.4
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 6.5e-09 66.6 193 27.5
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 6.5e-09 66.6 195 30.3
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 8.5e-09 66.2 198 29.3
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 8.5e-09 66.2 195 28.2
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 8.5e-09 66.2 203 28.6
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.1e-08 65.9 201 27.4
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.1e-08 65.9 192 29.7
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.1e-08 65.9 199 27.6
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.5e-08 65.5 195 27.7
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.5e-08 65.5 196 28.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.9e-08 65.1 201 25.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.9e-08 65.1 201 26.9
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 2.5e-08 64.7 193 28.0
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 4.2e-08 63.9 197 28.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 4.2e-08 63.9 201 26.9
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 5.5e-08 63.5 201 26.4
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 5.5e-08 63.5 201 25.4
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 5.5e-08 63.5 201 27.9
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 7.2e-08 63.2 189 28.6
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 9.4e-08 62.8 201 26.4
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 9.4e-08 62.8 201 26.4
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.2e-07 62.4 201 25.9
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.1e-07 61.6 179 30.2
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.7e-07 61.2 196 26.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 2.7e-07 61.2 155 26.5
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 3.6e-07 60.8 61 47.5
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 4.7e-07 60.5 201 26.4
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 6.1e-07 60.1 203 28.1
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 8.0e-07 59.7 60 50.0
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.0e-06 59.3 196 26.0
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.0e-06 57.4 188 26.1
arahy.Tifrunner.gnm1.ann1.RRD271 Arachis hypogaea HOM05D007897 ORTHO05D010061 8.8e-06 56.2 45 60.0


User provided reference genes

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