Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 3.3e-19 98.2 88 100.0
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 6.3e-18 94.0 88 95.5
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 2.6e-16 88.6 90 64.4
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 5.0e-15 84.3 88 71.6
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 1.9e-14 82.4 89 58.4
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 2.7e-13 78.6 89 82.0
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 2.3e-12 75.5 89 79.8
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 2.3e-12 75.5 88 51.1
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 3.9e-12 74.7 88 51.1
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 3.9e-12 74.7 84 57.1
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 5.1e-12 74.3 88 86.4
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 1.5e-11 72.8 90 53.3
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 2.5e-11 72.0 88 53.4
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 2.5e-11 72.0 88 53.4
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 5.7e-11 70.9 88 47.7
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 5.7e-11 70.9 89 76.4
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 1.3e-10 69.7 86 55.8
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 1.3e-10 69.7 86 52.3
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 3.7e-10 68.2 85 51.8
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 4.8e-10 67.8 89 73.0
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 8.2e-10 67.0 89 57.3
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.4e-09 66.2 86 54.7
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.4e-09 66.2 86 73.3
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 1.4e-09 66.2 86 73.3
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 1.8e-09 65.9 90 50.0
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 3.1e-09 65.1 87 75.9
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 4.1e-09 64.7 89 53.9
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 4.1e-09 64.7 89 53.9
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 1.2e-08 63.2 78 50.0
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 1.2e-08 63.2 81 76.5
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 2.6e-08 62.0 84 84.5
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 2.6e-08 62.0 85 47.1
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 4.5e-08 61.2 90 43.3
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 5.9e-08 60.8 88 78.4
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 5.9e-08 60.8 88 78.4
arahy.Tifrunner.gnm1.ann1.D7JHHW Arachis hypogaea HOM05D060794 ORTHO05D009548 7.7e-08 60.5 83 81.9
arahy.Tifrunner.gnm1.ann1.Y4V2H1 Arachis hypogaea HOM05D060794 ORTHO05D009548 7.7e-08 60.5 83 81.9
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 1.3e-07 59.7 68 83.8
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 1.7e-07 59.3 84 44.0
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 1.7e-07 59.3 88 70.5
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 2.2e-07 58.9 88 45.5
Eucgr.L00349 Eucalyptus grandis HOM05D007599 ORTHO05D009548 2.9e-07 58.5 89 80.9
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 8.5e-07 57.0 90 44.4
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 8.5e-07 57.0 90 52.2
Thecc.03G216000 Theobroma cacao HOM05D007599 ORTHO05D009548 1.9e-06 55.8 89 76.4
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 2.5e-06 55.5 84 61.9


User provided reference genes

Program Settings