Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 9.6e-225 783.1 378 100.0
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.1e-185 653.3 375 83.2
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 5.7e-185 651.0 375 82.4
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 9.4e-180 633.6 384 78.6
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.8e-178 629.4 372 80.4
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 4.4e-177 624.8 372 79.8
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 9.8e-177 623.6 375 81.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 8.3e-176 620.5 382 78.3
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.1e-175 620.2 382 78.3
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 3.1e-175 618.6 385 77.1
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 9.1e-175 617.1 370 79.7
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.2e-174 616.7 372 81.2
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 4.5e-174 614.8 372 77.7
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 7.7e-174 614.0 391 75.7
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 7.7e-174 614.0 372 78.0
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 7.7e-174 614.0 385 76.6
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 2.2e-173 612.5 385 76.6
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 1.1e-172 610.1 372 78.2
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.5e-172 609.8 373 78.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.5e-172 609.8 372 77.7
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 1.5e-172 609.8 373 76.9
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.9e-172 609.4 451 70.1
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.5e-172 609.0 372 78.0
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 2.5e-172 609.0 447 69.1
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 9.4e-172 607.1 385 75.8
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 9.4e-172 607.1 372 79.0
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.6e-171 606.3 372 78.2
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.1e-171 605.9 375 76.8
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 2.7e-171 605.5 372 78.5
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 6.1e-171 604.4 375 76.5
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.4e-170 603.2 372 75.8
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 6.8e-170 600.9 371 78.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.8e-170 600.5 375 75.7
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.5e-169 599.7 379 76.8
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.6e-169 599.0 378 76.2
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 3.4e-169 598.6 391 73.9
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 5.7e-169 597.8 382 76.4
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 7.5e-169 597.4 378 76.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.3e-168 596.7 391 73.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.7e-168 596.3 396 73.2
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.8e-168 595.5 405 70.9
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.8e-168 595.5 373 76.9
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 2.8e-168 595.5 373 77.2
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 4.9e-168 594.7 372 76.1
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 3.1e-167 592.0 372 76.3
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 4.1e-167 591.7 376 74.7
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 9.2e-167 590.5 403 72.7
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 1.0e-165 587.0 372 75.8
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.3e-165 586.6 372 75.0
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.3e-165 586.6 391 73.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.7e-165 586.3 365 75.9
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 1.7e-165 586.3 372 73.4
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 2.9e-165 585.5 372 74.5
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 3.3e-164 582.0 372 76.1
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 4.3e-164 581.6 375 77.9
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 1.8e-162 576.2 386 72.0
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.3e-162 575.9 372 72.8
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 3.4e-161 572.0 372 71.8
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 5.7e-161 571.2 375 72.5
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 4.9e-160 568.2 372 72.6
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 2.4e-159 565.8 372 71.5
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 3.2e-159 565.5 292 93.5
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.1e-159 565.1 379 73.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 7.0e-159 564.3 373 73.5
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 2.7e-158 562.4 372 71.8
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 5.9e-158 561.2 372 71.2
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.8e-158 560.8 370 71.6
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.0e-157 560.5 372 71.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 2.3e-157 559.3 372 70.7
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.0e-157 558.9 398 68.6
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 3.9e-157 558.5 372 71.0
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 3.9e-157 558.5 372 71.0
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 2.1e-155 552.7 383 71.0
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 3.6e-155 552.0 382 71.5
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 8.0e-155 550.8 373 72.4
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 5.8e-153 544.7 373 71.6
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.3e-152 543.5 373 70.0
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 4.9e-152 541.6 373 70.0
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 6.4e-152 541.2 372 70.2
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 6.4e-152 541.2 373 69.7
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 3.0e-149 532.3 372 68.8
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.0e-149 532.3 385 69.6
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 5.0e-149 531.6 372 68.8
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 8.6e-149 530.8 372 68.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 7.3e-148 527.7 351 73.5
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 7.3e-148 527.7 303 81.2
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.6e-147 525.4 372 69.9
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.4e-146 523.5 372 67.2
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.4e-146 523.5 372 67.2
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.4e-145 518.8 356 69.4
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 7.5e-145 517.7 371 68.5
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.7e-144 515.4 374 65.2
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.1e-142 509.6 316 78.2
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 7.8e-142 507.7 316 78.5
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.3e-141 506.1 316 76.9
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 7.3e-140 501.1 374 68.7
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 5.2e-138 495.0 356 66.3
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 7.6e-137 491.1 372 66.9
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 1.3e-136 490.3 361 67.6
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 9.2e-135 484.2 372 66.7
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 3.5e-134 482.3 274 82.1
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 7.8e-134 481.1 386 64.8
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 3.0e-133 479.2 365 61.9
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.1e-132 477.2 378 65.9
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 4.4e-129 465.3 378 59.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 6.4e-128 461.5 276 79.0
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 6.4e-128 461.5 362 65.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.6e-126 456.8 398 58.5
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 6.9e-122 441.4 372 62.1
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 9.3e-119 431.0 374 60.7
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 2.1e-118 429.9 322 68.9
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.3e-112 410.6 351 63.8
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 5.6e-108 395.2 213 87.3
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.2e-105 387.5 373 54.2
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 4.6e-102 375.6 390 51.8
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 4.6e-102 375.6 390 51.8
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.4e-95 354.0 347 51.9
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 7.9e-94 348.2 184 89.7
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.9e-88 329.7 220 76.8
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.3e-76 289.7 154 88.3
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.4e-76 288.5 154 87.7
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.6e-73 280.8 193 69.9
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 5.9e-73 278.9 161 83.9
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 6.5e-72 275.4 183 72.1
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 9.1e-66 255.0 159 77.4
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 1.2e-60 238.0 158 71.5
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 3.4e-60 236.5 158 70.9
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.9e-49 199.1 132 72.0
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.3e-47 192.2 120 76.7
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.3e-47 192.2 120 76.7
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 6.6e-40 169.1 326 37.7
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.6e-30 137.9 198 45.5
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 2.1e-30 137.5 333 30.0
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 6.2e-22 109.4 94 54.3
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 8.1e-22 109.0 163 41.7
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 5.2e-21 106.3 328 28.4
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 6.8e-21 105.9 69 73.9
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.9e-18 97.8 339 26.3
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 7.1e-18 95.9 54 72.2
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.1e-17 94.4 321 26.5
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 2.1e-17 94.4 70 61.4
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 7.8e-17 92.4 337 25.8
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 3.9e-16 90.1 329 25.2
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 8.7e-16 89.0 342 25.4
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.9e-15 87.8 321 25.9
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.1e-14 84.3 332 23.8
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.6e-14 83.6 343 23.9
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 4.7e-14 83.2 332 23.8
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 6.2e-14 82.8 140 35.7
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 6.2e-14 82.8 342 24.0
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.8e-13 81.3 322 24.5
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.4e-13 80.9 195 32.8
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 2.4e-13 80.9 46 76.1
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 4.0e-13 80.1 338 22.8
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 2.6e-12 77.4 318 23.9
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 7.6e-12 75.9 77 54.5
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 6.4e-11 72.8 47 72.3
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 1.6e-09 68.2 45 68.9
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 1.6e-09 68.2 45 68.9
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 1.6e-09 68.2 45 68.9
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.6e-09 66.6 186 25.8
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 5.1e-08 63.2 209 26.3
PRCOL_00002385 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 4.3e-07 60.1 262 27.1
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 9.6e-07 58.9 289 24.9
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.6e-06 57.0 317 24.6


User provided reference genes

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