Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.6e-55 218.0 109 100.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.9e-55 216.9 109 99.1
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.1e-51 206.5 109 93.6
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.4e-51 206.1 107 92.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.1e-51 204.5 107 90.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 5.3e-51 204.1 107 91.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 9.1e-51 203.4 107 91.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.0e-50 202.2 108 90.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 7.7e-50 200.3 109 91.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.7e-49 199.1 108 89.8
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.5e-49 197.2 103 93.2
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.5e-49 197.2 103 94.2
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 6.5e-49 197.2 109 86.2
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.1e-48 196.4 107 88.8
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.4e-48 196.1 108 88.9
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.5e-48 195.3 107 87.9
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 88.8
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 88.8
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 7.2e-48 193.7 106 89.6
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 7.2e-48 193.7 109 86.2
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 9.4e-48 193.4 107 86.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 9.4e-48 193.4 106 87.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.2e-47 193.0 101 92.1
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.2e-47 193.0 107 89.7
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.2e-47 193.0 108 88.0
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 87.7
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 87.7
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 2.1e-47 192.2 108 86.1
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 2.1e-47 192.2 107 88.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.6e-47 191.4 106 85.8
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.6e-47 191.4 106 87.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.7e-47 191.0 109 84.4
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 84.4
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 84.4
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 84.4
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 84.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 84.4
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 6.1e-47 190.7 109 86.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 104 88.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 104 88.5
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 85.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-46 188.3 104 87.5
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-46 188.3 104 87.5
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 84.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.9e-46 188.0 104 87.5
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.9e-46 188.0 109 84.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.9e-46 188.0 109 85.3
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 85.8
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.2e-46 187.6 107 86.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 104 88.5
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.1e-45 186.4 109 83.5
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.5e-45 186.0 108 81.5
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.0e-45 185.7 107 86.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 2.6e-45 185.3 103 85.4
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.6e-45 185.3 107 84.1
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 4.4e-45 184.5 109 82.6
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 4.4e-45 184.5 104 86.5
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.4e-45 184.5 109 83.5
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.7e-45 184.1 108 82.4
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 7.4e-45 183.7 109 82.6
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 9.7e-45 183.3 110 83.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 9.7e-45 183.3 103 85.4
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 9.7e-45 183.3 109 82.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.3e-44 183.0 121 77.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.3e-44 183.0 109 83.5
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.3e-44 183.0 109 81.7
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 2.2e-44 182.2 109 79.8
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.8e-44 181.8 109 82.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.8e-44 181.8 109 81.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 3.7e-44 181.4 108 81.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 84.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 4.8e-44 181.0 103 84.5
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 8.2e-44 180.3 104 81.7
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 80.4
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 109 78.9
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 109 80.7
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.8e-43 179.1 109 80.7
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 4.1e-43 177.9 109 79.8
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.1e-43 177.9 104 80.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 5.3e-43 177.6 98 87.8
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.3e-43 177.6 103 81.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 7.0e-43 177.2 109 79.8
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.0
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.6e-42 176.0 109 81.7
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 109 78.9
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 3.5e-42 174.9 109 80.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 3.5e-42 174.9 109 80.7
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 3.5e-42 174.9 98 86.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 5.9e-42 174.1 107 78.5
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 5.9e-42 174.1 107 78.5
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.0e-41 173.3 108 78.7
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.3e-41 172.9 100 82.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 86.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 98 82.7
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 76.1
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.2e-41 172.2 99 83.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 82.7
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 2.9e-41 171.8 101 83.2
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.8e-41 171.4 109 83.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 8.5e-41 170.2 98 84.7
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 8.5e-41 170.2 109 77.1
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 8.5e-41 170.2 107 78.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.5e-40 168.7 95 88.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 73.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.1e-39 165.6 107 76.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.7e-39 165.2 109 74.3
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 3.6e-39 164.9 111 74.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 6.1e-39 164.1 102 81.4
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.0e-38 163.3 107 76.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 161.8 98 79.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.2e-37 159.8 106 72.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.8e-36 155.2 103 72.8
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 8.2e-36 153.7 107 69.2
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 8.2e-36 153.7 107 69.2
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 68.2
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 3.1e-35 151.8 105 69.5
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 67.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 67.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 67.3
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 67.3
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 67.3
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 69.2
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.7e-34 148.7 107 66.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 5.9e-34 147.5 107 66.4
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 66.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 108 66.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 108 66.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 108 66.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.7e-33 146.0 108 66.7
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.2e-33 145.6 107 65.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.5e-32 142.1 99 69.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.2e-32 141.7 87 79.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.2e-32 141.7 102 64.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 5.5e-32 141.0 107 64.5
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.7e-31 138.7 94 78.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.6e-31 138.3 103 66.0
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.7e-31 137.9 107 68.2
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 4.4e-29 131.3 66 93.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.8e-27 125.9 98 60.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.6e-26 122.9 81 71.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.9e-26 120.9 65 89.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.9e-26 120.9 92 66.3
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 6.5e-25 117.5 75 81.3
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 8.6e-25 117.1 96 62.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.9e-24 115.9 91 63.7
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.9e-24 115.9 96 62.5
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.2e-23 113.2 93 62.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.0e-22 108.6 97 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 6.8e-22 107.5 88 59.1
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.7e-20 101.7 56 83.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.1e-19 100.1 87 57.5
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.7e-18 95.5 56 83.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.7e-18 95.5 79 64.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 7.8e-18 94.0 58 77.6
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.0e-17 93.6 57 80.7
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.9e-17 92.0 58 79.3
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 7.3e-16 87.4 109 45.9
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.3e-12 76.6 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.4e-11 73.2 46 80.4
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.5e-08 63.2 83 43.4


User provided reference genes

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