Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.5e-131 473.0 258 100.0
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.6e-61 238.8 296 49.0
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 6.7e-60 235.0 296 53.7
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.2e-55 219.9 292 46.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.5e-51 207.2 279 45.2
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.0e-48 196.8 298 41.9
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 2.9e-47 193.0 288 45.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.0e-44 184.5 282 45.7
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.3e-44 183.3 193 52.8
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 2.3e-44 183.3 300 40.7
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 6.7e-44 181.8 230 53.0
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.9e-43 180.3 199 53.8
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.7e-43 178.7 270 45.2
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.7e-43 178.7 270 45.2
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 7.4e-43 178.3 227 47.6
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.2e-42 176.8 226 53.1
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.8e-42 176.4 232 43.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.8e-42 175.6 276 46.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 6.9e-41 171.8 262 47.3
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 6.9e-41 171.8 291 43.0
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 2.0e-40 170.2 237 47.3
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.5e-40 169.1 236 46.2
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.3e-39 167.5 302 43.4
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.7e-39 167.2 274 43.8
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.7e-39 167.2 271 42.1
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.2e-39 166.8 211 45.0
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 2.9e-39 166.4 208 45.7
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 6.5e-39 165.2 261 46.4
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 8.5e-39 164.9 188 46.3
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.1e-38 164.5 291 36.8
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.9e-38 163.7 253 46.6
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.2e-38 162.9 237 43.9
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.5e-38 162.2 273 42.1
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 5.5e-38 162.2 249 40.2
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 9.4e-38 161.4 293 40.3
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 9.4e-38 161.4 274 45.3
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 2.7e-37 159.8 260 40.4
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 3.6e-37 159.5 302 41.7
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 3.6e-37 159.5 186 46.8
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 4.6e-37 159.1 293 37.5
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 6.1e-37 158.7 272 40.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.4e-36 157.5 193 50.8
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 3.0e-36 156.4 296 36.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.9e-36 156.0 245 40.0
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 6.7e-36 155.2 194 50.5
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.5e-35 154.1 225 46.7
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.0e-35 153.7 192 53.1
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 7.4e-35 151.8 293 37.9
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 2.2e-34 150.2 190 47.9
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 8.2e-34 148.3 190 50.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.8e-33 147.1 213 43.2
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 4.1e-33 146.0 247 37.2
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.1e-33 146.0 213 42.7
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 4.1e-33 146.0 288 41.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 4.1e-33 146.0 295 34.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.1e-33 144.8 282 40.8
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 9.1e-33 144.8 205 49.8
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 9.1e-33 144.8 203 45.8
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.2e-32 144.4 199 49.7
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.6e-32 143.3 235 45.1
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.6e-32 143.3 252 40.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.6e-32 143.3 290 37.6
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 4.5e-32 142.5 201 47.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.5e-32 142.5 229 45.4
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-31 141.0 187 42.2
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 8.5e-31 138.3 247 40.5
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 8.5e-31 138.3 283 39.2
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.1e-30 137.9 189 42.9
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.4e-30 137.5 194 48.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.9e-30 137.1 221 43.4
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.2e-30 136.3 303 38.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.2e-30 136.0 197 42.6
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 9.4e-30 134.8 295 38.3
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 2.7e-29 133.3 297 37.7
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 3.6e-29 132.9 241 41.1
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 3.6e-29 132.9 131 52.7
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.6e-29 132.9 214 39.7
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 3.6e-29 132.9 214 39.7
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.6e-29 132.9 236 38.1
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.7e-29 132.5 189 40.7
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 6.1e-29 132.1 186 45.7
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.4e-28 131.0 225 42.7
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.0e-28 129.8 190 45.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 5.1e-28 129.0 199 42.2
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 5.1e-28 129.0 258 39.5
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.6e-27 126.7 187 43.9
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.1e-25 121.3 248 35.1
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.8e-25 120.6 206 35.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.8e-25 120.6 190 37.9
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.8e-25 120.6 216 42.1
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.1e-25 119.8 97 54.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 4.1e-25 119.4 292 35.3
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 7.0e-25 118.6 183 42.1
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.6e-24 117.5 190 40.5
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 2.0e-24 117.1 182 37.9
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 6.5e-23 112.1 90 57.8
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 8.5e-23 111.7 188 44.1
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.5e-22 110.9 282 36.9
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 2.5e-22 110.2 242 34.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 2.5e-22 110.2 242 34.3
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 3.2e-22 109.8 242 34.3
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.2e-22 109.4 176 42.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.2e-21 107.8 179 38.5
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.2e-21 107.8 223 44.4
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.6e-21 107.5 285 34.0
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.1e-21 107.1 260 37.3
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-20 104.4 89 51.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.4e-20 104.4 185 37.3
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 6.7e-20 102.1 106 45.3
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.6e-19 100.1 270 32.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.2e-18 97.1 181 40.3
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.4e-17 94.4 105 49.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 3.1e-17 93.2 121 43.8
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 5.3e-17 92.4 242 31.8
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.6e-16 90.9 173 34.7
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 3.5e-16 89.7 173 34.1
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.7e-15 87.4 248 29.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.0e-15 85.9 82 45.1
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 1.5e-14 84.3 172 35.5
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.2e-14 83.2 84 54.8
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 7.2e-14 82.0 78 55.1
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 4.7e-13 79.3 126 42.1
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 8.0e-13 78.6 109 36.7
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.6e-11 73.6 104 36.5
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 8.3e-10 68.6 55 52.7
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 1.4e-09 67.8 65 49.2
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 4.1e-09 66.2 62 46.8
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.0e-07 61.6 191 36.6


User provided reference genes

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