Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.8e-54 214.9 103 100.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-53 212.6 103 99.0
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.0e-44 182.2 100 88.0
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.7e-44 181.8 100 86.0
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.7e-44 181.8 100 86.0
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.6e-44 181.0 103 83.5
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.6e-44 181.0 103 83.5
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 6.0e-44 180.6 103 86.4
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.7e-43 179.1 99 83.8
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 6.6e-43 177.2 102 83.3
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.5e-42 175.3 100 82.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 9.5e-42 173.3 100 81.0
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.1e-41 172.2 100 79.0
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.1e-41 172.2 100 80.0
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.6e-41 171.4 100 82.0
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.1e-40 169.9 100 77.0
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.4e-40 169.5 100 78.0
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.8e-40 169.1 100 77.0
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.3e-40 168.7 100 80.0
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.3e-40 168.7 98 78.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 4.0e-40 167.9 100 80.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.0e-40 167.9 100 76.0
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.0e-40 167.9 100 76.0
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.2e-40 167.5 100 78.0
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 5.2e-40 167.5 100 78.0
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.2e-39 166.4 99 80.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.5e-39 166.0 105 76.2
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 2.0e-39 165.6 100 79.0
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.4e-39 164.9 100 76.0
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 3.4e-39 164.9 99 76.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 3.4e-39 164.9 99 76.8
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 4.4e-39 164.5 100 74.0
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 5.8e-39 164.1 100 76.0
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 7.5e-39 163.7 100 76.0
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 9.8e-39 163.3 101 76.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 9.8e-39 163.3 100 75.0
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.7e-38 162.5 105 75.2
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.7e-38 162.5 98 78.6
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.2e-38 162.2 100 75.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 2.2e-38 162.2 100 74.0
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.9e-38 161.8 100 78.0
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.9e-38 161.8 100 74.0
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-38 161.4 105 75.2
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-38 161.4 105 75.2
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-38 161.4 105 75.2
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 3.7e-38 161.4 100 74.0
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 3.7e-38 161.4 100 73.0
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 4.9e-38 161.0 100 78.0
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.4e-38 160.6 100 75.0
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 6.4e-38 160.6 100 75.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.9e-37 159.1 100 75.0
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.9e-37 159.1 100 75.0
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.9e-37 159.1 105 73.3
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.4e-37 158.7 100 76.0
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 2.4e-37 158.7 100 76.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.4e-37 158.7 100 71.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 3.2e-37 158.3 100 74.0
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 4.1e-37 157.9 100 73.0
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 4.1e-37 157.9 100 73.0
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 4.1e-37 157.9 100 75.0
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.4e-37 157.5 123 64.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 5.4e-37 157.5 100 75.0
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 9.2e-37 156.8 100 74.0
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 9.2e-37 156.8 101 75.2
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.2e-36 156.4 100 79.0
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 3.5e-36 154.8 100 72.0
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 3.5e-36 154.8 100 71.0
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.0e-36 154.1 102 75.5
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.0e-36 154.1 105 72.4
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 7.8e-36 153.7 101 73.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-35 152.9 98 75.5
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.9e-35 151.4 100 70.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 5.1e-35 151.0 100 73.0
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 6.6e-35 150.6 101 72.3
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.1e-34 149.8 100 75.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.5e-34 149.4 100 70.0
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 5.6e-34 147.5 100 69.0
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-33 146.4 100 70.0
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.2e-33 146.4 103 68.0
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-33 146.0 100 69.0
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-33 146.0 100 68.0
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.6e-33 146.0 100 68.0
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 2.8e-33 145.2 104 68.3
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.8e-33 145.2 104 67.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.8e-33 145.2 100 68.0
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 8.1e-33 143.7 100 69.0
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.4e-32 142.9 100 68.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.8e-32 142.5 100 67.0
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 5.2e-32 141.0 100 66.0
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 6.8e-32 140.6 99 64.6
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 8.9e-32 140.2 100 67.0
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.2e-31 139.8 100 67.0
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.2e-31 139.8 100 65.0
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 2.0e-31 139.0 100 65.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 2.6e-31 138.7 100 66.0
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 2.6e-31 138.7 100 66.0
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 7.5e-31 137.1 101 65.3
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.3e-30 136.3 100 65.0
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.9e-30 135.2 100 64.0
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 3.7e-30 134.8 100 64.0
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 6.4e-30 134.0 102 64.7
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 8.3e-30 133.7 100 63.0
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.3e-30 133.7 100 63.0
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 8.3e-30 133.7 100 63.0
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 8.3e-30 133.7 100 63.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 8.3e-30 133.7 72 84.7
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.1e-29 133.3 109 63.3
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.9e-29 132.5 100 62.0
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.7e-28 128.6 72 81.9
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 6.0e-28 127.5 100 58.0
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 3.0e-27 125.2 100 59.0
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 5.1e-27 124.4 72 77.8
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.1e-26 123.2 97 61.9
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.9e-26 122.5 100 54.0
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 7.3e-26 120.6 102 60.8
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.6e-25 118.2 101 54.5
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.4e-24 116.3 102 57.8
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 2.9e-22 108.6 67 77.6
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 6.4e-22 107.5 102 52.0
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.9e-21 105.9 65 70.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.6e-20 101.3 100 55.0
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.3e-19 99.8 100 53.0
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.3e-19 99.0 100 44.0
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.5e-18 95.5 79 62.0
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 4.3e-18 94.7 81 60.5
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 6.2e-17 90.9 100 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 2.4e-16 89.0 100 41.0
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.5e-15 86.3 100 49.0
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.3e-14 83.2 52 71.2
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.9e-14 82.0 52 75.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 4.9e-14 81.3 103 42.7
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.2e-12 76.6 101 42.6
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.2e-12 76.6 99 45.5
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 7.8e-12 73.9 69 43.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 7.8e-12 73.9 51 68.6
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 3.0e-11 72.0 91 46.2
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.9e-11 71.6 47 72.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 3.6e-09 65.1 65 40.0


User provided reference genes

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