Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.9e-69 265.8 138 100.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 3.7e-49 198.4 138 80.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.7e-49 198.4 138 77.5
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 6.3e-49 197.6 141 76.6
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.2e-47 193.4 133 81.2
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 7.7e-47 190.7 139 77.0
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 5.0e-46 188.0 139 75.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 6.5e-46 187.6 138 75.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.5e-45 185.7 136 74.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.2e-45 185.3 136 73.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 7.2e-45 184.1 136 72.8
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.1e-44 182.6 138 74.6
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.2e-43 177.9 136 73.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 8.8e-43 177.2 140 69.3
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-42 176.4 132 75.0
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.0e-42 176.0 138 69.6
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 2.6e-42 175.6 142 68.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 4.4e-42 174.9 138 70.3
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.7e-42 174.5 138 68.1
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 7.5e-42 174.1 137 70.8
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 9.8e-42 173.7 137 71.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 9.8e-42 173.7 142 68.3
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.3e-41 173.3 138 71.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-41 173.3 139 71.9
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.3e-41 173.3 138 68.1
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.3e-41 173.3 138 68.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.7e-41 172.9 140 73.6
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.8e-41 172.2 127 75.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.3e-41 170.6 133 72.2
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.8e-40 169.5 142 69.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.8e-40 169.5 155 63.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.1e-40 168.3 130 73.8
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.1e-40 168.3 142 71.1
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.2e-39 166.8 139 69.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.7e-39 165.6 143 68.5
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.5e-39 165.2 157 62.4
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 5.9e-39 164.5 137 67.2
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.7e-39 164.1 136 66.9
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.0e-38 163.7 138 66.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.0e-38 163.7 143 67.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.3e-38 163.3 143 69.9
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.7e-38 162.9 135 68.9
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.2e-38 162.5 139 66.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.2e-38 162.5 145 65.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.2e-38 162.5 144 63.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 6.5e-38 161.0 144 68.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 8.5e-38 160.6 139 67.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-37 160.2 147 67.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.5e-37 159.8 138 68.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-37 159.1 161 57.8
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.2e-37 158.7 143 67.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.2e-37 158.3 141 66.0
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.5e-37 157.9 139 64.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 7.2e-37 157.5 140 67.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 7.2e-37 157.5 139 64.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.4e-37 157.1 144 68.1
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.2e-36 156.8 139 64.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-36 156.8 141 66.0
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.6e-36 156.4 139 64.0
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-36 156.4 140 65.7
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 6.1e-36 154.5 140 65.0
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.1e-36 154.5 130 68.5
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.0e-35 153.7 139 65.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.4e-35 153.3 145 60.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.0e-35 152.1 139 62.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 5.2e-35 151.4 160 57.5
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 8.8e-35 150.6 161 59.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 8.8e-35 150.6 136 62.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 8.8e-35 150.6 136 62.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-34 150.2 139 61.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-34 149.8 130 66.9
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.6e-34 149.1 139 64.0
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 7.5e-34 147.5 163 55.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.7e-33 146.4 142 66.9
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.8e-32 142.9 132 65.9
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.4e-32 142.5 143 62.9
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 3.1e-32 142.1 150 60.7
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.4e-32 141.4 144 64.6
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 7.0e-32 141.0 152 60.5
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.0e-31 139.4 139 63.3
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.3e-30 136.7 134 60.4
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-30 136.3 152 59.9
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-30 136.3 152 59.9
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.7e-30 136.3 142 60.6
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.3e-30 136.0 141 63.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.9e-30 135.6 142 59.9
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.8e-30 135.2 154 54.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 5.0e-30 134.8 152 59.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.0e-30 134.8 136 61.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.6e-30 134.0 142 57.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.1e-29 133.7 142 59.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-29 133.3 141 58.2
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.9e-29 132.9 142 59.9
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.5e-29 131.3 152 60.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.2e-28 130.2 157 53.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.1e-28 129.4 140 58.6
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.7e-28 128.3 152 56.6
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-27 127.1 150 56.7
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.3e-27 125.9 138 54.3
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 6.8e-27 124.4 191 46.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.8e-27 124.4 148 58.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.0e-26 122.9 122 62.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 4.4e-26 121.7 156 54.5
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 7.5e-26 120.9 139 56.8
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 9.8e-26 120.6 160 51.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 9.8e-26 120.6 138 57.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.3e-25 120.2 151 55.6
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.2e-25 119.4 136 55.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.7e-25 118.6 153 52.9
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.3e-25 117.9 150 55.3
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.1e-24 117.1 154 54.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.4e-24 115.9 138 58.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-24 115.5 139 54.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-24 115.5 139 54.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 5.4e-24 114.8 94 72.3
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 9.2e-24 114.0 147 52.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.2e-23 113.6 151 55.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.5e-23 112.1 155 53.5
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.0e-22 110.5 155 52.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.0e-22 110.5 149 54.4
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.7e-22 109.8 156 52.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-21 107.1 151 51.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-21 107.1 151 51.0
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.5e-21 106.7 151 51.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.5e-21 106.7 151 51.0
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.9e-21 106.3 136 53.7
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.5e-21 105.9 153 52.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.3e-21 105.5 139 54.7
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.8e-20 102.4 103 60.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.4e-19 100.1 97 61.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 6.8e-19 97.8 95 67.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.7e-17 93.2 123 49.6
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.9e-17 92.4 95 56.8
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 8.3e-17 90.9 119 52.1
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-16 90.5 133 51.1
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-16 90.1 156 48.1
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.4e-16 89.4 157 47.1
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.4e-16 89.4 119 47.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.1e-16 88.6 156 47.4
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.7e-15 85.9 150 44.7
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.5e-15 85.5 163 42.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.5e-15 85.5 104 52.9
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 6.0e-15 84.7 158 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.7e-14 83.2 80 61.2
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-14 83.2 101 49.5
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-14 82.4 165 40.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 3.0e-14 82.4 98 52.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.0e-14 81.6 128 46.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.5e-13 79.3 162 42.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 3.3e-13 79.0 150 44.0
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.0e-11 72.0 72 58.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 3.7e-09 65.5 163 35.6
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-06 55.8 58 63.8
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-06 55.8 58 63.8


User provided reference genes

Program Settings