Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 4.6e-180 634.4 318 100.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 4.8e-177 624.4 333 95.5
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 4.0e-147 525.0 320 80.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.0e-146 522.7 335 79.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.0e-146 522.7 337 76.6
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.4e-146 521.9 330 79.4
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 5.7e-146 521.2 332 78.6
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 9.8e-146 520.4 320 81.2
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.3e-145 520.0 331 79.2
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.3e-145 520.0 333 78.4
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.8e-145 518.8 337 78.3
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.7e-145 518.5 334 77.2
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.3e-145 517.7 333 78.7
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 8.3e-145 517.3 334 79.3
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 8.3e-145 517.3 330 80.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-144 516.5 334 77.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.4e-144 515.8 334 77.8
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 3.1e-144 515.4 332 77.7
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.1e-144 515.4 332 78.9
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-144 515.0 339 76.4
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.4e-144 514.6 335 76.4
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.4e-144 514.6 333 77.5
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 9.2e-144 513.8 377 71.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.2e-143 513.5 330 78.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.2e-143 513.5 320 78.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.6e-143 513.1 333 77.5
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.7e-143 512.3 333 77.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.7e-143 512.3 331 78.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.5e-143 511.5 337 76.0
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 7.8e-143 510.8 333 77.2
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.3e-142 510.0 331 76.1
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.7e-142 509.6 319 78.7
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.0e-142 508.1 334 76.3
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-141 506.5 333 76.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.5e-141 506.5 320 78.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.6e-141 504.6 327 76.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.5e-141 503.8 332 76.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.2e-140 503.4 337 76.3
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 2.1e-140 502.7 331 75.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 3.0e-139 498.8 333 75.4
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 5.2e-139 498.0 337 76.3
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.8e-139 497.7 333 74.2
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 6.8e-139 497.7 333 74.2
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 8.9e-139 497.3 333 74.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.2e-138 496.9 337 74.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.5e-138 496.5 321 76.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-138 495.7 347 73.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 3.4e-138 495.4 320 77.2
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.4e-138 495.0 339 72.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.8e-138 494.6 338 73.7
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.8e-138 494.6 374 68.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 9.8e-138 493.8 328 74.7
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 9.8e-138 493.8 316 77.5
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.7e-137 493.0 332 74.4
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-137 493.0 371 68.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.7e-137 493.0 337 74.2
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.9e-137 492.3 333 75.4
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.9e-137 492.3 347 73.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.7e-137 491.9 337 73.6
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.9e-137 491.5 319 76.2
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 8.3e-137 490.7 328 74.1
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.1e-136 490.3 333 75.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.4e-136 490.0 325 75.1
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.8e-136 489.6 338 72.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.8e-136 489.6 338 72.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 4.1e-136 488.4 341 72.7
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.2e-135 486.9 320 75.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.0e-135 486.1 324 74.7
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.7e-135 485.7 328 73.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.5e-135 485.3 333 73.0
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 4.6e-135 485.0 330 74.2
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.0e-134 483.8 374 66.8
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.0e-134 483.8 326 73.3
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 3.0e-134 482.3 319 75.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 3.9e-134 481.9 333 72.7
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 5.0e-134 481.5 327 74.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 5.0e-134 481.5 327 74.9
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.3e-133 478.8 335 71.6
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 5.6e-133 478.0 335 71.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.3e-133 477.6 322 76.1
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.8e-132 475.7 332 72.6
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.6e-132 475.3 403 64.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 8.0e-132 474.2 335 72.2
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.1e-131 473.8 332 70.5
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.1e-131 473.8 320 72.2
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 2.3e-131 472.6 337 71.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.6e-130 469.2 337 71.2
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.2e-129 466.1 333 69.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.9e-129 465.7 326 72.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-128 463.0 304 75.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.3e-126 456.8 331 70.1
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.6e-124 449.9 338 68.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 4.4e-122 441.8 337 67.7
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.0e-119 431.4 315 67.9
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 6.0e-119 431.4 334 64.7
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 4.4e-114 415.2 336 61.6
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.9e-113 412.5 340 62.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 4.1e-112 408.7 329 64.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.3e-110 403.7 250 81.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.7e-110 403.3 250 80.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 4.7e-108 395.2 250 78.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.1e-107 392.5 331 61.0
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 5.2e-107 391.7 243 80.2
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.5e-106 390.2 249 78.3
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.9e-105 386.0 317 63.4
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 7.8e-103 377.9 316 62.7
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 8.1e-100 367.9 373 57.1
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.5e-98 362.1 316 61.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.6e-92 343.6 242 68.6
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 8.7e-86 321.2 317 54.3
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 6.0e-79 298.5 198 76.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.5e-72 276.6 232 61.6
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.9e-65 253.1 330 45.2
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-63 247.7 218 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.3e-57 227.6 176 64.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.1e-56 224.6 263 47.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.9e-56 223.8 241 51.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 8.0e-55 218.4 121 86.0
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.3e-52 211.1 122 81.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 3.7e-52 209.5 346 41.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 8.2e-52 208.4 122 80.3
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-44 183.7 133 72.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.3e-44 182.2 133 72.2
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-42 176.0 144 66.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.5e-40 171.0 114 74.6
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-40 169.9 126 71.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-40 169.9 126 71.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 3.6e-39 166.4 126 69.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.4e-37 159.5 99 78.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.9e-32 144.1 199 45.7
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-30 138.3 147 46.9
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-29 134.8 107 65.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.7e-28 129.8 96 71.9
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.5e-24 117.9 73 76.7
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 6.8e-22 109.0 80 71.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-21 106.7 200 39.5
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 4.4e-21 106.3 73 69.9
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.3e-20 104.8 78 64.1
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.1e-19 101.7 85 61.2
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.4e-19 101.3 61 80.3
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 2.0e-18 97.4 66 71.2
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.6e-15 86.7 74 58.1
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 3.7e-12 76.6 55 69.1
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.0e-09 68.6 51 60.8
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.3e-09 67.4 52 61.5
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.4e-06 58.2 54 55.6
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.4e-06 58.2 150 32.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 2.3e-06 57.4 154 31.2
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 3.1e-06 57.0 153 30.7


User provided reference genes

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