Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.0e-88 328.6 172 100.0
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 2.8e-70 268.9 175 79.4
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 4.0e-69 265.0 175 80.0
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 5.2e-69 264.6 177 80.2
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 5.4e-66 254.6 172 76.7
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 2.7e-65 252.3 171 81.3
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 8.6e-64 247.3 175 72.6
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 5.6e-63 244.6 175 73.7
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 1.6e-62 243.0 184 74.5
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 6.2e-62 241.1 175 72.6
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.4e-61 239.2 175 73.1
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 6.9e-61 237.7 175 72.0
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.2e-60 236.9 175 69.7
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.2e-60 236.9 175 69.7
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.5e-60 236.5 175 70.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.5e-60 236.5 175 71.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.4e-60 235.0 175 68.0
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 4.4e-60 235.0 172 71.5
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 9.9e-60 233.8 175 71.4
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.3e-59 233.4 175 68.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.7e-59 233.0 175 70.3
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.2e-59 232.6 175 69.1
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 2.2e-59 232.6 175 70.9
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 4.9e-59 231.5 175 69.7
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 6.4e-59 231.1 175 70.3
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.1e-58 230.3 175 69.1
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.4e-58 229.9 175 70.9
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 3.2e-58 228.8 175 69.7
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 7.1e-58 227.6 172 70.9
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 7.1e-58 227.6 175 70.3
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 9.3e-58 227.3 174 71.8
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.2e-57 226.9 287 51.2
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 3.5e-57 225.3 175 66.3
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.0e-56 223.8 175 66.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.3e-56 223.4 175 67.4
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.7e-56 223.0 175 69.7
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 3.9e-56 221.9 172 66.3
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 3.9e-56 221.9 175 68.6
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 3.9e-56 221.9 175 69.1
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.1e-55 220.3 175 65.7
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.5e-55 219.9 175 69.1
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.9e-55 219.5 175 66.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.5e-55 219.2 175 66.9
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.5e-55 219.2 172 65.1
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 3.3e-55 218.8 175 66.3
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 4.3e-55 218.4 175 68.0
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 7.3e-55 217.6 174 66.1
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.3e-54 216.9 172 66.9
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.8e-54 214.9 174 64.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.8e-54 214.9 175 68.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 8.1e-54 214.2 174 64.9
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 8.1e-54 214.2 175 61.7
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.4e-53 213.4 174 64.4
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.4e-53 213.4 175 66.3
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 9.0e-53 210.7 174 64.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 9.0e-53 210.7 175 66.9
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.2e-52 210.3 174 63.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 2.6e-52 209.1 170 61.8
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 5.8e-52 208.0 176 65.9
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 2.2e-51 206.1 175 63.4
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 3.8e-51 205.3 174 62.1
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 3.8e-51 205.3 174 62.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 8.4e-51 204.1 175 64.0
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.1e-50 203.8 175 61.7
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 1.4e-50 203.4 174 62.1
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 1.4e-50 203.4 174 62.1
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.4e-50 203.4 175 60.6
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 2.4e-50 202.6 170 62.4
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 3.2e-50 202.2 174 64.4
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.2e-50 202.2 171 62.6
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 7.1e-50 201.1 175 62.9
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 7.1e-50 201.1 172 61.6
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.2e-49 200.3 191 58.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 2.1e-49 199.5 172 61.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.7e-49 199.1 172 61.6
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.6e-49 198.4 175 60.0
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.4e-47 191.0 146 69.2
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 4.0e-45 185.3 172 60.5
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 2.4e-42 176.0 175 59.4
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.8e-40 169.9 175 53.1
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 6.7e-40 167.9 157 55.4
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.1e-39 167.2 175 53.1
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.4e-39 164.5 162 58.6
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 8.2e-38 161.0 134 64.9
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 8.2e-38 161.0 164 51.2
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.4e-37 159.5 172 53.5
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.8e-35 152.1 235 41.7
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.8e-35 152.1 161 47.8
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 5.5e-34 148.3 198 46.5
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 4.6e-33 145.2 171 46.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 2.3e-32 142.9 111 72.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 1.4e-29 133.7 175 46.9
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 2.0e-28 129.8 175 46.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.0e-24 115.9 82 76.8
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 3.4e-20 102.4 71 80.3
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 5.1e-16 88.6 111 48.6
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 6.5e-11 71.6 73 54.8
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.4e-10 70.5 65 50.8
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.9e-10 70.1 62 51.6
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 5.5e-10 68.6 65 49.2
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-09 67.0 61 60.7
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.6e-09 67.0 65 64.6
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.1e-09 66.6 62 54.8
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.1e-09 66.6 48 66.7
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 1.0e-08 64.3 188 28.2
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.8e-08 61.2 61 49.2
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.1e-07 60.8 78 41.0


User provided reference genes

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