Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.1e-159 563.5 288 100.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.6e-158 562.8 288 99.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 5.4e-135 484.6 290 86.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.8e-130 469.5 288 83.0
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.4e-127 459.9 289 80.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.7e-123 444.9 286 74.8
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 8.1e-123 444.1 287 78.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.5e-121 439.9 288 76.4
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.6e-121 439.1 287 79.4
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.2e-120 436.0 282 78.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.4e-120 434.1 288 74.7
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.9e-119 433.0 286 74.5
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.4e-119 432.6 282 77.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 9.2e-119 430.6 285 76.1
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.7e-118 429.1 282 77.0
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 6.0e-118 427.9 288 72.9
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 7.8e-118 427.6 282 73.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.0e-117 427.2 282 76.2
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.0e-117 427.2 284 75.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.0e-117 425.6 294 75.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.9e-117 425.2 292 74.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 5.1e-117 424.9 289 73.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 5.1e-117 424.9 288 72.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 8.6e-117 424.1 282 75.9
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.9e-116 422.9 288 71.5
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 2.5e-116 422.5 288 72.9
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.5e-116 422.5 281 73.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 4.3e-116 421.8 287 73.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 7.3e-116 421.0 289 73.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 7.3e-116 421.0 284 76.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 9.6e-116 420.6 286 72.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.2e-115 420.2 287 73.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-115 419.9 292 73.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.1e-115 419.5 288 71.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.6e-115 418.7 285 73.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.6e-115 418.7 288 71.9
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.2e-115 417.9 287 72.5
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.1e-114 417.2 288 71.2
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.4e-114 416.8 287 72.5
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.2e-113 413.7 288 71.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.2e-113 413.7 281 74.4
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.6e-113 412.5 285 73.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.6e-113 412.5 288 72.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.6e-113 412.5 286 74.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 5.8e-113 411.4 285 71.9
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.6e-113 411.0 287 71.8
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 7.6e-113 411.0 288 70.5
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.2e-112 409.5 285 72.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 6.4e-112 407.9 283 72.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.4e-111 406.8 288 70.5
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.2e-111 405.2 282 72.3
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.2e-111 405.2 285 71.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 9.3e-111 404.1 284 69.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.2e-110 403.7 230 87.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 2.7e-110 402.5 237 86.5
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.7e-110 402.5 283 71.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 6.0e-110 401.4 259 76.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.7e-109 399.8 285 71.2
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.1e-109 398.3 297 69.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.1e-108 397.1 288 71.2
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.5e-108 396.0 281 70.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 7.3e-108 394.4 284 71.1
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.3e-107 393.7 280 69.6
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.2e-107 391.3 244 78.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 6.2e-107 391.3 291 67.7
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 8.1e-107 391.0 319 64.9
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.1e-107 391.0 282 71.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.0e-106 387.5 292 68.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.5e-105 386.7 285 69.1
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.0e-105 386.3 283 67.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.0e-105 386.3 291 67.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.6e-105 384.4 272 71.3
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.9e-104 382.5 272 70.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.2e-103 379.0 229 80.3
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 9.3e-103 377.5 295 65.4
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.2e-102 377.1 284 66.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 67.6
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 67.6
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 67.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.1e-101 371.7 230 79.1
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.1e-100 370.5 290 65.2
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.9e-100 369.8 284 67.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.9e-100 369.8 278 70.1
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.6e-100 368.2 286 67.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 9.6e-100 367.5 284 67.3
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 9.6e-100 367.5 284 66.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.3e-99 367.1 284 67.6
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.3e-99 367.1 261 71.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.6e-99 366.7 284 66.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.8e-99 365.9 218 86.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.6e-99 365.5 284 66.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.1e-98 364.0 278 67.6
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.1e-98 364.0 288 64.9
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.4e-98 363.6 245 74.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.4e-98 362.8 293 63.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 5.3e-98 361.7 285 66.3
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 65.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 65.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 65.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.0e-97 359.8 284 65.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.4e-97 359.0 282 66.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 7.6e-97 357.8 284 65.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 9.9e-97 357.5 284 65.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 284 65.1
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.7e-96 356.7 277 67.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 216 78.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.9e-95 353.2 283 65.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 5.5e-95 351.7 286 64.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.8e-93 346.7 278 65.5
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.2e-91 338.2 290 62.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.8e-90 336.7 280 62.1
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 4.9e-88 328.6 243 67.9
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.5e-87 326.2 229 70.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.6e-86 323.6 252 65.1
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-82 310.5 231 68.0
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.1e-82 308.9 245 65.3
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 4.1e-82 308.9 230 66.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.3e-82 308.5 231 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.3e-76 289.3 292 50.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.3e-76 289.3 236 59.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 7.2e-71 271.6 289 49.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 3.3e-68 262.7 271 51.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-63 246.9 210 65.2
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.7e-61 238.4 155 72.9
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.3e-59 234.2 268 51.1
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-58 231.1 139 78.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.2e-55 219.2 211 60.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.2e-55 219.2 197 51.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-54 217.6 197 51.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.7e-54 215.7 197 50.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.0e-53 214.5 258 50.0
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-53 214.5 197 50.3
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-53 214.2 224 56.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-51 207.6 138 73.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 162 64.8
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.3e-43 178.3 197 44.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-39 165.6 186 48.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.3e-31 139.8 119 62.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-30 137.5 83 83.1
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-30 136.0 207 45.4
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 8.0e-30 135.2 76 84.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-28 131.0 182 39.0
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.5e-28 128.6 192 46.4
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 9.8e-28 128.3 189 42.3
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.4e-26 123.6 218 34.4
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 7.0e-26 122.1 99 63.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 7.0e-26 122.1 99 63.6
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-25 120.6 199 35.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 59 84.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-19 100.9 58 82.8
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.7e-19 99.8 57 82.5
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 58 81.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 64 73.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 7.3e-15 85.5 91 46.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.8e-14 83.6 54 75.9
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.5e-12 77.8 51 70.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-08 64.7 92 41.3
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 1.9e-07 60.8 46 65.2
HanXRQChr13g0418021 Helianthus annuus HOM05D055070 ORTHO05D005871 5.6e-07 59.3 82 45.1


User provided reference genes

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