Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.8e-245 852.4 518 100.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.8e-245 852.4 518 100.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 7.9e-153 544.7 519 59.7
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.1e-138 497.7 521 57.2
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.1e-137 493.4 525 56.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.3e-123 447.6 540 50.7
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.6e-121 440.7 525 51.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.4e-119 432.6 527 49.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.8e-118 429.1 522 49.6
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 6.3e-118 428.7 537 50.1
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.1e-117 427.9 522 51.3
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 3.1e-117 426.4 522 49.8
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 7.0e-117 425.2 522 52.3
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.6e-116 424.1 519 49.1
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 4.5e-116 422.5 555 48.5
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.7e-115 420.6 527 52.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 5.0e-115 419.1 525 48.8
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 8.5e-115 418.3 527 48.4
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.5e-114 416.8 518 50.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.2e-114 416.4 519 49.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 3.2e-114 416.4 525 48.6
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.2e-114 416.0 564 47.9
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 7.2e-114 415.2 520 49.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.0e-112 411.4 531 51.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.8e-112 408.7 520 49.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 8.8e-112 408.3 520 48.8
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.6e-111 406.8 523 48.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.4e-111 406.4 529 48.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 3.4e-111 406.4 530 50.6
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 9.8e-111 404.8 537 47.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 7.0e-109 398.7 517 45.8
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.7e-108 396.7 526 46.8
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.7e-107 394.0 518 46.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.7e-107 394.0 518 47.5
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.3e-107 393.7 530 48.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.5e-106 391.0 520 48.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-106 391.0 523 46.8
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.2e-106 389.8 521 46.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.2e-106 389.4 522 46.6
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 7.2e-106 388.7 364 58.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.2e-105 387.9 517 45.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.1e-105 387.1 518 46.9
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 4.7e-105 386.0 519 47.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 4.7e-105 386.0 520 46.9
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.1e-105 385.6 519 45.5
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 8.0e-105 385.2 521 47.8
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.4e-104 384.4 532 46.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 5.2e-104 382.5 518 46.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 5.2e-104 382.5 518 46.1
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.0e-103 380.6 523 44.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.6e-103 380.2 519 45.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.6e-103 380.2 518 46.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 7.5e-103 378.6 364 59.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.5e-103 378.6 524 46.4
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.3e-102 377.9 520 46.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.3e-102 377.9 518 45.6
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.3e-102 377.9 518 45.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.7e-102 377.5 523 45.1
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 8.3e-102 375.2 522 45.6
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.4e-101 373.6 524 45.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.1e-101 373.2 521 44.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 5.4e-101 372.5 550 43.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 8.6e-99 365.2 518 43.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 8.6e-99 365.2 524 44.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.1e-98 364.8 479 46.8
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.9e-98 364.0 519 44.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-98 363.6 519 45.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.6e-98 362.5 521 43.6
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.6e-97 360.9 520 43.5
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.6e-97 360.9 527 44.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.6e-97 360.9 519 45.1
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 6.1e-97 359.0 367 53.4
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.0e-96 356.7 369 52.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.0e-96 356.7 369 52.3
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.8e-96 355.5 371 53.6
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 5.7e-95 352.4 534 41.4
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.7e-95 352.4 517 43.3
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 9.8e-95 351.7 499 45.5
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.7e-94 350.9 531 43.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.7e-94 349.7 525 43.4
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 8.3e-94 348.6 529 41.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.4e-93 347.8 520 42.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.8e-93 347.4 517 45.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 7.0e-93 345.5 521 47.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.5e-92 343.2 527 43.1
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.6e-92 342.8 524 42.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 7.8e-92 342.0 527 42.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.0e-91 341.7 529 42.7
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.7e-91 340.9 533 48.0
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.3e-91 340.5 371 51.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-89 334.7 527 42.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.5e-87 327.8 518 41.3
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.6e-87 327.0 519 41.6
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 8.3e-86 322.0 530 42.3
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.1e-85 321.6 523 40.3
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.2e-84 318.2 516 42.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.5e-82 311.2 516 39.0
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 9.5e-82 308.5 365 47.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.5e-79 298.9 556 37.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-77 294.7 516 38.0
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.6e-75 285.8 336 51.5
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.5e-74 284.6 520 38.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.5e-74 284.6 517 38.7
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 5.6e-74 282.7 370 45.4
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.7e-73 279.6 518 38.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.8e-72 277.7 500 41.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 3.4e-71 273.5 518 38.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.7e-68 263.8 517 36.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.8e-68 262.3 370 42.7
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-67 261.9 519 36.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.3e-66 256.9 492 36.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.4e-64 250.8 519 36.2
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.4e-64 250.8 439 39.4
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 9.9e-63 245.4 521 39.3
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 5.4e-61 239.6 528 33.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.5e-55 221.5 367 42.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 7.6e-55 219.2 368 40.5
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.4e-53 213.0 372 37.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.3e-51 208.4 368 37.2
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 9.9e-47 192.2 740 25.8
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 3.2e-45 187.2 361 35.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.9e-44 182.6 229 48.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.3e-43 181.0 489 31.9
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.9e-37 161.4 498 28.5
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.5e-37 159.8 318 35.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.0e-35 155.6 226 40.7
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 8.7e-35 152.5 373 31.1
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.3e-33 148.7 352 33.0
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-32 145.6 226 40.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 4.1e-32 143.7 228 39.0
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-28 132.1 456 25.7
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.7e-27 126.3 230 33.9
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 8.8e-27 125.9 456 25.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 4.1e-24 117.1 227 36.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.2e-21 107.5 73 61.6
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.7e-20 104.4 159 40.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.7e-20 104.4 79 62.0
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.6e-20 104.0 225 33.8
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.4e-19 102.1 235 33.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.5e-18 98.6 401 25.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.3e-18 97.4 453 24.7
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 5.7e-18 96.7 76 55.3
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.8e-17 94.4 74 55.4
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-16 92.4 72 55.6
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.1e-16 92.4 78 53.8
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-13 82.4 226 27.9
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.4e-13 79.3 90 54.4
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.4e-13 79.3 64 51.6
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.8e-11 75.1 231 27.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.4e-10 69.7 64 50.0
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 9.7e-10 69.3 180 25.0
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.4e-08 64.7 89 49.4
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.0e-08 63.2 64 45.3
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 7.0e-08 63.2 89 49.4
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.0e-06 59.3 127 36.2
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 1.0e-06 59.3 112 31.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.3e-06 58.9 197 30.5
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.7e-06 58.5 131 31.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 2.9e-06 57.8 46 52.2
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.8e-06 57.4 138 31.2
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 5.0e-06 57.0 112 35.7
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 8.5e-06 56.2 138 29.7


User provided reference genes

Program Settings