Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029107 Camellia sinensis var. sinensis HOM05D034752 ORTHO05D028367 1.8e-50 202.2 96 100.0
CSS0012785 Camellia sinensis var. sinensis HOM05D034752 ORTHO05D028367 7.0e-39 163.7 146 61.6
CSS0038383 Camellia sinensis var. sinensis HOM05D034752 ORTHO05D028367 1.7e-37 159.1 114 72.8
CSS0021021 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 5.2e-10 67.8 58 63.8
Actinidia19392 Actinidia chinensis HOM05D000807 ORTHO05D000662 6.8e-10 67.4 38 81.6
vmacro13666 Vaccinium macrocarpon HOM05D000807 ORTHO05D000662 2.0e-09 65.9 38 78.9
Actinidia31063 Actinidia chinensis HOM05D000807 ORTHO05D000662 2.6e-09 65.5 38 76.3
Rhsim07G0055700 Rhododendron simsii HOM05D000807 ORTHO05D000662 3.4e-09 65.1 38 78.9
Sed0013071 Sechium edule HOM05D000807 ORTHO05D000662 4.4e-09 64.7 38 78.9
CSS0050450 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 5.8e-09 64.3 58 58.6
Duzib268G0740 Durio zibethinus HOM05D000807 ORTHO05D000662 5.8e-09 64.3 38 76.3
MSTRG.20583 Avicennia marina HOM05D000807 ORTHO05D000662 7.6e-09 63.9 38 76.3
Dinv09356 Davidia involucrata HOM05D000807 ORTHO05D000662 7.6e-09 63.9 38 76.3
Migut.B01295 Erythranthe guttata HOM05D000807 ORTHO05D000662 7.6e-09 63.9 38 76.3
Oeu014582.1 Olea europaea HOM05D000807 ORTHO05D000662 7.6e-09 63.9 38 76.3
SGA_v2.0_scaffold4G02524 Striga asiatica HOM05D000807 ORTHO05D000662 7.6e-09 63.9 38 76.3
CiPaw.13G004900 Carya illinoinensis HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
Haze_03207 Corylus avellana HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
MELO3C023976.2 Cucumis melo HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
CsaV3_3G032150 Cucumis sativus L. HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
DCAR_022402 Daucus carota HOM05D000807 ORTHO05D000662 9.9e-09 63.5 34 85.3
Manes.07G006000 Manihot esculenta HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
Manes.10G143000 Manihot esculenta HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
Sed0014991 Sechium edule HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
Sed0027404 Sechium edule HOM05D000807 ORTHO05D000662 9.9e-09 63.5 38 76.3
Migut.N01597 Erythranthe guttata HOM05D000807 ORTHO05D000662 1.3e-08 63.2 38 76.3
Gohir.D08G038900 Gossypium hirsutum HOM05D000807 ORTHO05D000662 1.3e-08 63.2 38 73.7
Gorai.004G037400 Gossypium raimondii HOM05D000807 ORTHO05D000662 1.3e-08 63.2 38 73.7
Sc14g0005070 Simmondsia chinensis HOM05D000807 ORTHO05D000662 1.3e-08 63.2 38 76.3
Potri.001G266900 Populus trichocarpa HOM05D000807 ORTHO05D000662 1.7e-08 62.8 38 76.3
Sabra09G0045100 Salix brachista HOM05D000807 ORTHO05D000662 1.7e-08 62.8 34 82.4
SalBow5G4008 Salvia bowleyana HOM05D000807 ORTHO05D000662 1.7e-08 62.8 38 73.7
SalBow5G4687 Salvia bowleyana HOM05D000807 ORTHO05D000662 1.7e-08 62.8 38 73.7
SalBow7G1248 Salvia bowleyana HOM05D000807 ORTHO05D000662 1.7e-08 62.8 38 73.7
Cc02_g27950 Coffea canephora HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
FvH4_7g01040 Fragaria vesca HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
FAN03G1921 Fragaria x ananassa HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
FAN06G2756 Fragaria x ananassa HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
FAN10G1608 Fragaria x ananassa HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
MD02G1311900 Malus domestica HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
MD07G1010700 Malus domestica HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
Prupe.2G013000 Prunus persica HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
RcHm_v2.0_Chr1g0315981 Rosa chinensis HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
RcHm_v2.0_Chr1g0316021 Rosa chinensis HOM05D000807 ORTHO05D000662 2.2e-08 62.4 38 73.7
CSS0041446 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 2.9e-08 62.0 38 76.3
COL.COLO4_04854 Corchorus olitorius HOM05D000807 ORTHO05D000662 2.9e-08 62.0 38 73.7
Lj7C570T10 Lonicera japonica HOM05D000807 ORTHO05D000662 2.9e-08 62.0 34 79.4
Duzib133G1162 Durio zibethinus HOM05D000807 ORTHO05D000662 3.8e-08 61.6 38 73.7
Gohir.A08G028100 Gossypium hirsutum HOM05D000807 ORTHO05D000662 3.8e-08 61.6 38 71.1
Potri.009G061100 Populus trichocarpa HOM05D000807 ORTHO05D000662 3.8e-08 61.6 38 73.7
Prupe.2G013100 Prunus persica HOM05D000807 ORTHO05D000662 3.8e-08 61.6 34 79.4
Duzib138G0543 Durio zibethinus HOM05D000807 ORTHO05D000662 4.9e-08 61.2 38 73.7
Gohir.A08G144400 Gossypium hirsutum HOM05D000807 ORTHO05D000662 4.9e-08 61.2 33 81.8
Gohir.D08G165400 Gossypium hirsutum HOM05D000807 ORTHO05D000662 4.9e-08 61.2 33 81.8
Gorai.004G172500 Gossypium raimondii HOM05D000807 ORTHO05D000662 4.9e-08 61.2 33 81.8
Lalb_Chr25g0283081 Lupinus albus HOM05D000807 ORTHO05D000662 4.9e-08 61.2 45 64.4
QL04p006577 Quercus lobata HOM05D000807 ORTHO05D000662 4.9e-08 61.2 38 73.7
GSVIVG01032092001 Vitis vinifera HOM05D000807 ORTHO05D000662 4.9e-08 61.2 38 73.7
MELO3C023550.2 Cucumis melo HOM05D000807 ORTHO05D000662 6.4e-08 60.8 38 76.3
CsaV3_7G031060 Cucumis sativus L. HOM05D000807 ORTHO05D000662 6.4e-08 60.8 38 76.3
FAN01G2482 Fragaria x ananassa HOM05D000807 ORTHO05D000662 6.4e-08 60.8 38 71.1
Thecc.01G410900 Theobroma cacao HOM05D000807 ORTHO05D000662 6.4e-08 60.8 38 71.1
unitig_26.g9282 Utricularia gibba HOM05D000807 ORTHO05D000662 6.4e-08 60.8 38 71.1
Cfa010763 Carpinus fangiana HOM05D000807 ORTHO05D000662 8.4e-08 60.5 38 73.7
THA.LOC104826676 Tarenaya hassleriana HOM05D000807 ORTHO05D000662 8.4e-08 60.5 38 71.1
AL3G19430 Arabidopsis lyrata HOM05D000807 ORTHO05D000662 1.1e-07 60.1 38 68.4
AT3G08040 Arabidopsis thaliana HOM05D000807 ORTHO05D000662 1.1e-07 60.1 38 68.4
ECA248G3159 Erigeron canadensis HOM05D000807 ORTHO05D000662 1.1e-07 60.1 38 73.7
Sabra16G0163700 Salix brachista HOM05D000807 ORTHO05D000662 1.1e-07 60.1 38 71.1
GSVIVG01032091001 Vitis vinifera HOM05D000807 ORTHO05D000662 1.1e-07 60.1 34 79.4
SGA_v2.0_scaffold119G32733 Striga asiatica HOM05D000807 ORTHO05D000662 1.4e-07 59.7 34 76.5
Eucgr.G03383 Eucalyptus grandis HOM05D000807 ORTHO05D000662 1.9e-07 59.3 34 79.4
PGR044G0310 Punica granatum HOM05D000807 ORTHO05D000662 1.9e-07 59.3 38 73.7
TWI73G0031 Tripterygium wilfordii HOM05D000807 ORTHO05D000662 1.9e-07 59.3 38 71.1
ClCG09G004170 Citrullus lanatus HOM05D000807 ORTHO05D000662 2.4e-07 58.9 38 73.7
ClCG10G012360 Citrullus lanatus HOM05D000807 ORTHO05D000662 2.4e-07 58.9 33 81.8
Glyma.09G102800 Glycine max HOM05D000807 ORTHO05D000662 2.4e-07 58.9 38 71.1
Glyma.13G203000 Glycine max HOM05D000807 ORTHO05D000662 2.4e-07 58.9 38 71.1
Glyma.15G274600 Glycine max HOM05D000807 ORTHO05D000662 2.4e-07 58.9 38 71.1
HanXRQChr01g0015791 Helianthus annuus HOM05D000807 ORTHO05D000662 2.4e-07 58.9 38 73.7
Aa31LG5G18590 Aethionema arabicum HOM05D000807 ORTHO05D000662 3.2e-07 58.5 33 75.8
CARHR082780 Cardamine hirsuta HOM05D000807 ORTHO05D000662 3.2e-07 58.5 37 64.9
Nitab4.5_0000634g0220 Nicotiana tabacum HOM05D000807 ORTHO05D000662 3.2e-07 58.5 35 71.4
Nitab4.5_0001186g0050 Nicotiana tabacum HOM05D000807 ORTHO05D000662 3.2e-07 58.5 35 71.4
Sc10g0000060 Simmondsia chinensis HOM05D000807 ORTHO05D000662 3.2e-07 58.5 38 73.7
Carub.0003s0762 Capsella rubella HOM05D000807 ORTHO05D000662 4.2e-07 58.2 38 65.8
AUR62009384 Chenopodium quinoa HOM05D000807 ORTHO05D000662 4.2e-07 58.2 38 71.1
AUR62023065 Chenopodium quinoa HOM05D000807 ORTHO05D000662 4.2e-07 58.2 38 71.1
Eucgr.G03382 Eucalyptus grandis HOM05D000807 ORTHO05D000662 4.2e-07 58.2 34 76.5
HanXRQChr01g0015741 Helianthus annuus HOM05D000807 ORTHO05D000662 4.2e-07 58.2 34 79.4
HanXRQChr01g0015751 Helianthus annuus HOM05D000807 ORTHO05D000662 4.2e-07 58.2 34 79.4
BcaC01g04267 Brassica carinata HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
BcaC05g29588 Brassica carinata HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 68.4
BcaC05g29613 Brassica carinata HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
A03p35620 Brassica napus HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
A03p35630 Brassica napus HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
C03p43270 Brassica napus HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
C05p59100 Brassica napus HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
BolC3t16596H Brassica oleracea HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
BolC5t34587H Brassica oleracea HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
BraA03t12737Z Brassica rapa HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
BraA03t12738Z Brassica rapa HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 65.8
Cpa.g.sc275.2 Carica papaya HOM05D000807 ORTHO05D000662 5.4e-07 57.8 33 78.8
HanXRQChr01g0015771 Helianthus annuus HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 71.1
Lsat_1_v5_gn_1_106760 Lactuca sativa HOM05D000807 ORTHO05D000662 5.4e-07 57.8 38 71.1
Atru.chr11.2661 Acer truncatum HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 68.4
BcaB04g21257 Brassica carinata HOM05D000807 ORTHO05D000662 7.1e-07 57.4 33 72.7
BcaC09g47974 Brassica carinata HOM05D000807 ORTHO05D000662 7.1e-07 57.4 33 72.7
A05p40260 Brassica napus HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 65.8
C05p59340 Brassica napus HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 65.8
BolC1t05506H Brassica oleracea HOM05D000807 ORTHO05D000662 7.1e-07 57.4 33 72.7
Lj3g0019531 Lotus japonicus HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 68.4
Sp3g06950 Schrenkiella parvula HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 65.8
TPR.G12151 Trifolium pratense HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 68.4
TWI09G1083 Tripterygium wilfordii HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 68.4
VMungo1127G1514 Vigna mungo HOM05D000807 ORTHO05D000662 7.1e-07 57.4 38 68.4
arahy.Tifrunner.gnm1.ann1.PWI1R1 Arachis hypogaea HOM05D000807 ORTHO05D000662 9.3e-07 57.0 34 73.5
arahy.Tifrunner.gnm1.ann1.YHN8YH Arachis hypogaea HOM05D000807 ORTHO05D000662 9.3e-07 57.0 34 73.5
HanXRQChr01g0015611 Helianthus annuus HOM05D000807 ORTHO05D000662 9.3e-07 57.0 34 76.5
Solyc01g087150.3 Solanum lycopersicum HOM05D000807 ORTHO05D000662 9.3e-07 57.0 35 68.6
Sopen01g034210 Solanum pennellii HOM05D000807 ORTHO05D000662 9.3e-07 57.0 35 68.6
PGSC0003DMG400006865 Solanum tuberosum HOM05D000807 ORTHO05D000662 9.3e-07 57.0 35 68.6
PGSC0003DMG400006866 Solanum tuberosum HOM05D000807 ORTHO05D000662 9.3e-07 57.0 35 68.6
VMungo1080G0866 Vigna mungo HOM05D000807 ORTHO05D000662 9.3e-07 57.0 33 75.8
BraA01t04346Z Brassica rapa HOM05D000807 ORTHO05D000662 1.2e-06 56.6 33 72.7
CANSAT80G0824 Cannabis sativa HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 68.4
Ca_14408_v3 Cicer arietinum L. HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 68.4
DCAR_003211 Daucus carota HOM05D000807 ORTHO05D000662 1.2e-06 56.6 48 62.5
Thhalv10020489m.g Eutrema salsugineum HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 63.2
Medtr3g029510 Medicago truncatula HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 68.4
QL01p004738 Quercus lobata HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 65.8
Sabra09G0039000 Salix brachista HOM05D000807 ORTHO05D000662 1.2e-06 56.6 38 65.8
arahy.Tifrunner.gnm1.ann1.5DIS84 Arachis hypogaea HOM05D000807 ORTHO05D000662 1.6e-06 56.2 33 72.7
arahy.Tifrunner.gnm1.ann1.ZAC0X2 Arachis hypogaea HOM05D000807 ORTHO05D000662 1.6e-06 56.2 33 72.7
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.6e-06 56.2 38 63.2
Lj3g0025542 Lotus japonicus HOM05D000807 ORTHO05D000662 1.6e-06 56.2 38 65.8
Aqoxy1G00309 Aquilegia oxysepala HOM05D000807 ORTHO05D000662 2.1e-06 55.8 38 65.8
Duzib150G0518 Durio zibethinus HOM05D000807 ORTHO05D000662 2.1e-06 55.8 38 65.8
Lalb_Chr03g0034071 Lupinus albus HOM05D000807 ORTHO05D000662 2.1e-06 55.8 34 70.6
Medtr8g037175 Medicago truncatula HOM05D000807 ORTHO05D000662 2.1e-06 55.8 38 63.2
Phvul.011G211900 Phaseolus vulgaris HOM05D000807 ORTHO05D000662 2.1e-06 55.8 38 65.8
Psat5g207560 Pisum sativum HOM05D000807 ORTHO05D000662 2.1e-06 55.8 38 65.8
EL10Ac2g04329 Beta vulgaris HOM05D000807 ORTHO05D000662 2.7e-06 55.5 38 65.8
Potri.009G053700 Populus trichocarpa HOM05D000807 ORTHO05D000662 2.7e-06 55.5 38 65.8
CSS0037231 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 3.5e-06 55.1 38 63.2
CiPaw.13G161000 Carya illinoinensis HOM05D000807 ORTHO05D000662 3.5e-06 55.1 38 63.2
Lsat_1_v5_gn_7_67660 Lactuca sativa HOM05D000807 ORTHO05D000662 3.5e-06 55.1 37 70.3
Manes.14G002600 Manihot esculenta HOM05D000807 ORTHO05D000662 4.6e-06 54.7 38 63.2
VMungo1127G0504 Vigna mungo HOM05D000807 ORTHO05D000662 4.6e-06 54.7 39 61.5
Atru.chr1.1047 Acer truncatum HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 63.2
arahy.Tifrunner.gnm1.ann1.BK8UPU Arachis hypogaea HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 63.2
CiPaw.01G174100 Carya illinoinensis HOM05D000807 ORTHO05D028367 6.0e-06 54.3 34 70.6
Dinv36262 Davidia involucrata HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 65.8
Duzib170G0690 Durio zibethinus HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 63.2
Lj1C331T2 Lonicera japonica HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 63.2
MD03G1175500 Malus domestica HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 63.2
Manes.09G026900 Manihot esculenta HOM05D000807 ORTHO05D000662 6.0e-06 54.3 37 62.2
Phvul.005G021900 Phaseolus vulgaris HOM05D000807 ORTHO05D000662 6.0e-06 54.3 33 72.7
VMungo1127G1247 Vigna mungo HOM05D000807 ORTHO05D000662 6.0e-06 54.3 38 60.5
ATR0605G372 Amborella trichopoda HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
arahy.Tifrunner.gnm1.ann1.KX3ASU Arachis hypogaea HOM05D001150 ORTHO05D000998 7.8e-06 53.9 38 63.2
arahy.Tifrunner.gnm1.ann1.Z17CL9 Arachis hypogaea HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
BcaC01g04268 Brassica carinata HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
C03p43250 Brassica napus HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
BolC3t16594H Brassica oleracea HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
Cpa.g.sc84.57 Carica papaya HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
DCAR_022401 Daucus carota HOM05D000807 ORTHO05D000662 7.8e-06 53.9 34 76.5
Gohir.A09G114500 Gossypium hirsutum HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 63.2
MD11G1193400 Malus domestica HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 60.5
PSO339G5431 Papaver somniferum HOM05D000807 ORTHO05D000662 7.8e-06 53.9 34 70.6
Potri.016G053600 Populus trichocarpa HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 60.5
unitig_26.g9043 Utricularia gibba HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 65.8
GSVIVG01033317001 Vitis vinifera HOM05D000807 ORTHO05D000662 7.8e-06 53.9 38 60.5


User provided reference genes

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