Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.5e-195 686.0 358 100.0
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.5e-158 562.4 372 83.3
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 4.9e-154 548.1 372 80.1
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 8.4e-154 547.4 372 80.4
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.4e-153 545.8 372 79.6
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 7.1e-153 544.3 372 79.3
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 7.1e-153 544.3 372 79.0
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.2e-152 543.5 372 78.5
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 1.6e-152 543.1 372 78.5
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.1e-152 542.7 372 79.8
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 2.7e-152 542.3 372 79.3
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.7e-152 542.3 372 79.8
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 6.0e-152 541.2 372 79.3
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.0e-151 540.4 372 79.6
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 3.0e-151 538.9 372 79.6
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 3.9e-151 538.5 372 79.0
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.1e-151 538.1 372 78.5
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 5.1e-151 538.1 372 79.3
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 8.7e-151 537.3 372 79.3
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 8.7e-151 537.3 372 78.8
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.1e-150 537.0 372 79.0
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 1.5e-150 536.6 372 79.3
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 1.9e-150 536.2 372 79.0
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 1.9e-150 536.2 372 79.3
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.9e-150 536.2 372 78.5
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 2.5e-150 535.8 372 78.8
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 3.3e-150 535.4 372 78.5
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 3.3e-150 535.4 372 79.3
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 3.3e-150 535.4 372 78.2
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 3.3e-150 535.4 372 79.6
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 4.3e-150 535.0 370 78.6
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 5.6e-150 534.6 372 78.2
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 7.4e-150 534.3 372 78.5
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 7.4e-150 534.3 372 77.4
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 9.6e-150 533.9 372 78.8
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.3e-149 533.5 372 78.2
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 1.3e-149 533.5 372 78.5
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.6e-149 533.1 372 78.2
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 2.1e-149 532.7 372 78.8
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 3.7e-149 531.9 372 78.5
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 3.7e-149 531.9 372 78.2
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 3.7e-149 531.9 372 78.2
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 4.8e-149 531.6 372 77.4
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 6.2e-149 531.2 372 78.5
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 6.2e-149 531.2 372 79.6
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.1e-148 530.4 372 78.0
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.4e-148 530.0 372 76.6
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.4e-148 530.0 371 78.2
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.4e-148 530.0 372 76.9
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.4e-148 530.0 372 76.9
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 1.4e-148 530.0 372 78.5
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.8e-148 529.6 372 76.9
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.4e-148 529.3 372 77.2
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 3.1e-148 528.9 372 76.9
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 4.0e-148 528.5 372 76.9
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 6.9e-148 527.7 372 78.2
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 6.9e-148 527.7 372 78.2
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 9.0e-148 527.3 372 79.3
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 9.0e-148 527.3 374 78.1
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 1.5e-147 526.6 372 77.7
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.5e-147 526.6 372 78.0
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.0e-147 526.2 374 77.8
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 2.0e-147 526.2 377 77.5
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 2.6e-147 525.8 372 76.1
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 3.4e-147 525.4 372 79.0
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.4e-147 525.4 372 79.0
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 5.8e-147 524.6 372 77.2
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 7.6e-147 524.2 372 76.9
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 7.6e-147 524.2 372 77.7
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 7.6e-147 524.2 372 77.2
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.0e-146 523.9 372 76.9
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 1.3e-146 523.5 372 78.0
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.7e-146 523.1 374 77.5
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.7e-146 523.1 374 77.5
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.7e-146 523.1 372 77.7
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.7e-146 523.1 372 77.7
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.9e-146 522.3 374 77.3
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.9e-146 521.5 374 77.0
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.9e-146 521.5 374 75.9
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 8.4e-146 520.8 378 75.1
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 8.4e-146 520.8 374 75.7
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 8.4e-146 520.8 372 76.3
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 1.1e-145 520.4 372 78.5
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.9e-145 519.6 354 80.2
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 7.1e-145 517.7 372 75.3
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 7.1e-145 517.7 372 77.2
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 7.1e-145 517.7 372 76.3
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 9.3e-145 517.3 372 76.6
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 1.2e-144 516.9 372 75.5
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.2e-144 516.9 372 75.8
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 1.2e-144 516.9 372 76.1
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.2e-144 516.9 372 76.3
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.6e-144 516.5 372 76.3
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 2.1e-144 516.2 370 75.4
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.7e-144 515.8 372 76.1
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 3.5e-144 515.4 372 76.3
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 4.6e-144 515.0 372 74.7
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 4.6e-144 515.0 372 76.6
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 6.0e-144 514.6 372 75.8
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 6.0e-144 514.6 372 74.5
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 6.0e-144 514.6 373 75.9
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 7.9e-144 514.2 365 77.0
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.0e-143 513.8 372 75.8
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.0e-143 513.8 372 75.8
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.3e-143 513.5 372 75.8
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.8e-143 513.1 372 75.8
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 3.0e-143 512.3 373 75.9
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 3.0e-143 512.3 373 75.9
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 3.0e-143 512.3 373 75.9
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 3.0e-143 512.3 372 75.5
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 3.0e-143 512.3 373 75.9
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 3.0e-143 512.3 373 75.9
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.9e-143 511.9 372 76.1
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 1.1e-142 510.4 372 76.1
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.5e-142 510.0 324 84.3
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 5.7e-142 508.1 373 75.3
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 1.3e-141 506.9 373 75.3
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 1.3e-141 506.9 330 81.2
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 4.8e-141 505.0 372 74.7
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 6.3e-141 504.6 412 69.2
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 1.1e-140 503.8 372 75.3
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 6.9e-140 501.1 372 74.2
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 8.5e-138 494.2 372 74.2
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.5e-137 492.7 318 82.4
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 4.2e-137 491.9 378 71.7
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 2.1e-136 489.6 321 81.3
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 8.7e-135 484.2 391 68.3
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 9.7e-134 480.7 372 70.4
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 2.6e-131 472.6 372 69.4
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.9e-130 469.2 372 72.0
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 3.2e-129 465.7 372 68.8
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 2.7e-128 462.6 375 69.3
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 4.7e-128 461.8 372 68.8
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.4e-127 460.3 372 69.1
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 2.3e-127 459.5 373 69.7
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 1.2e-123 447.2 344 71.8
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 6.5e-122 441.4 372 68.3
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.8e-116 423.3 311 74.6
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.1e-113 414.1 310 75.2
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 6.1e-112 408.3 279 78.1
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 2.6e-110 402.9 359 64.3
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 3.6e-104 382.5 374 57.8
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 2.3e-95 353.2 353 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 5.2e-95 352.1 263 71.1
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 3.8e-90 335.9 367 52.9
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.3e-85 320.9 234 76.1
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.9e-81 307.0 221 75.6
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 2.1e-72 276.9 223 67.7
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 7.1e-68 261.9 255 62.7
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.3e-66 257.7 180 76.1
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 8.1e-64 248.4 355 48.5
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 3.9e-58 229.6 163 76.7
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 6.9e-55 218.8 173 70.5
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 7.6e-54 215.3 149 76.5
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.3e-50 204.5 373 43.7
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.8e-47 194.1 186 59.7
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 2.0e-46 190.7 141 73.0
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 1.3e-45 188.0 162 65.4
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 7.9e-43 178.7 143 68.5
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 1.5e-41 174.5 182 53.3
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 6.9e-39 165.6 151 62.9
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.8e-37 159.8 133 64.7
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 1.1e-33 148.3 181 54.1
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 4.9e-29 132.9 118 62.7
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 1.5e-17 94.7 106 56.6
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 7.4e-17 92.4 86 61.6
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 6.9e-15 85.9 55 80.0
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.9e-13 80.5 74 59.5
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.4e-10 71.6 41 82.9
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 4.8e-08 63.2 85 48.2
Eucgr.H01408 Eucalyptus grandis HOM05D003693 ORTHO05D191043 7.0e-07 59.3 35 80.0


User provided reference genes

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