Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.4e-40 168.3 81 100.0
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.5e-34 149.1 73 100.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.2e-23 112.8 75 76.0
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.5e-21 105.9 73 75.3
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.6e-20 102.4 80 65.0
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 3.6e-20 101.3 73 67.1
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 4.7e-20 100.9 73 67.1
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.8e-19 99.0 73 71.2
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 2.3e-19 98.6 76 67.1
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 2.3e-19 98.6 75 62.7
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.3e-19 98.6 74 70.3
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 2.3e-19 98.6 72 68.1
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 6.8e-19 97.1 72 68.1
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 6.8e-19 97.1 72 69.4
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.5e-18 95.9 71 67.6
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.0e-18 95.5 72 66.7
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 3.4e-18 94.7 77 64.9
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 4.4e-18 94.4 72 68.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 5.8e-18 94.0 71 67.6
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 5.8e-18 94.0 76 59.2
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 7.5e-18 93.6 73 63.0
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 7.5e-18 93.6 71 62.0
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 7.5e-18 93.6 76 61.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.8e-18 93.2 76 59.2
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.3e-17 92.8 71 64.8
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.7e-17 92.4 72 65.3
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.7e-17 92.4 71 60.6
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.7e-17 92.4 69 65.2
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.2e-17 92.0 72 62.5
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 3.7e-17 91.3 72 70.8
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.7e-17 91.3 72 65.3
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.9e-17 90.9 73 63.0
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 4.9e-17 90.9 72 66.7
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 6.4e-17 90.5 72 66.7
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 8.3e-17 90.1 72 65.3
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 8.3e-17 90.1 75 62.7
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.1e-16 89.7 72 63.9
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.1e-16 89.7 72 66.7
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 1.4e-16 89.4 71 64.8
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 2.4e-16 88.6 70 67.1
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 2.4e-16 88.6 72 63.9
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 3.2e-16 88.2 72 65.3
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 3.2e-16 88.2 75 61.3
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 3.2e-16 88.2 72 65.3
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 3.2e-16 88.2 71 59.2
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 4.1e-16 87.8 73 57.5
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 5.4e-16 87.4 75 58.7
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 7.0e-16 87.0 75 62.7
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 9.2e-16 86.7 71 63.4
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 9.2e-16 86.7 71 63.4
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.2e-15 86.3 72 63.9
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.6e-15 85.9 72 56.9
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 2.0e-15 85.5 72 66.7
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.0e-15 85.5 72 62.5
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 2.7e-15 85.1 75 61.3
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 6.0e-15 84.0 71 60.6
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.7e-14 82.4 70 55.7
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 2.3e-14 82.0 71 54.9
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 3.0e-14 81.6 71 56.3
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 5.0e-14 80.9 77 53.2
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 5.0e-14 80.9 77 53.2
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 8.6e-14 80.1 72 61.1
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.5e-13 79.3 73 54.8
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 1.5e-13 79.3 73 57.5
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.9e-13 79.0 73 54.8
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.9e-13 79.0 73 54.8
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.5e-13 78.6 75 52.0
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 3.3e-13 78.2 79 49.4
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 3.3e-13 78.2 73 54.8
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 3.3e-13 78.2 78 50.0
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 5.6e-13 77.4 79 44.3
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 5.6e-13 77.4 72 52.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 9.5e-13 76.6 72 51.4
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.2e-12 76.3 72 51.4
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.6e-12 75.9 72 51.4
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.1e-12 75.5 74 54.1
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.1e-12 75.5 72 51.4
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.8e-12 75.1 72 54.2
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.8e-12 75.1 78 46.2
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 3.6e-12 74.7 73 57.5
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 4.7e-12 74.3 69 53.6
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.2e-12 73.9 71 50.7
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 6.2e-12 73.9 73 50.7
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 8.1e-12 73.6 71 49.3
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.1e-11 73.2 73 52.1
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-11 73.2 78 46.2
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-11 73.2 78 42.3
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-11 73.2 78 42.3
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-11 73.2 78 42.3
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.1e-11 73.2 78 42.3
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.4e-11 72.8 72 45.8
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.4e-11 72.8 72 45.8
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.8e-11 72.4 72 55.6
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 3.1e-11 71.6 73 49.3
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 3.1e-11 71.6 73 53.4
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 3.1e-11 71.6 73 49.3
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.2e-10 69.7 72 52.8
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 3.4e-10 68.2 71 49.3
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.3e-09 66.2 44 63.6
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 1.7e-09 65.9 72 51.4
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 2.2e-09 65.5 41 70.7
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 1.1e-08 63.2 70 47.1
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 2.4e-08 62.0 72 41.7
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.4e-08 62.0 72 48.6
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 3.2e-08 61.6 66 45.5
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 9.2e-08 60.1 43 55.8
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.7e-06 55.8 78 41.0


User provided reference genes

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