Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 0.0e+00 1826.2 991 100.0
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 0.0e+00 1821.6 991 99.8
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.3e-305 1053.1 999 63.9
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.4e-267 926.0 956 60.3
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.0e-257 892.5 996 58.7
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 5.6e-256 888.3 1133 53.6
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.4e-222 777.3 428 94.4
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.0e-221 773.5 419 95.7
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 3.2e-219 766.1 1024 51.0
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 6.4e-212 741.9 893 55.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 4.5e-205 719.2 1004 49.2
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.3e-204 717.6 1006 49.1
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 6.5e-196 688.7 1025 48.8
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 3.8e-188 662.9 1001 46.2
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.2e-187 659.4 1040 46.0
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 7.4e-184 648.7 1005 46.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 5.0e-180 636.0 952 47.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 8.0e-178 628.6 1006 46.2
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.0e-172 611.7 1040 44.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 6.5e-172 609.0 1003 45.3
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 6.5e-172 609.0 1017 45.4
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.2e-170 604.7 1004 45.0
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.0e-169 601.7 1005 46.1
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 7.5e-168 595.5 1005 45.2
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 3.1e-166 590.1 995 44.7
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.6e-165 587.8 1033 45.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 2.7e-165 587.0 946 44.3
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.9e-164 583.6 997 43.6
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 6.5e-164 582.4 950 45.6
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.5e-163 579.3 1010 43.5
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.2e-163 578.9 1010 43.4
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 7.2e-163 578.9 893 48.2
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.6e-162 576.6 1009 43.4
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.7e-162 576.2 1004 43.2
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.0e-161 575.1 1027 44.6
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.6e-160 570.5 967 45.0
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.3e-159 568.2 1020 40.3
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 8.3e-159 565.5 1012 44.2
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.1e-155 555.1 1094 42.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 4.7e-154 549.7 1005 42.8
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.4e-152 543.5 982 43.2
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.3e-151 541.6 1028 40.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 4.5e-149 533.1 1011 43.3
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.0e-148 531.9 999 42.4
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.0e-148 531.9 1013 40.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 5.6e-147 526.2 1018 41.2
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 3.6e-146 523.5 1003 42.4
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.9e-143 513.8 1015 42.0
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 3.7e-143 513.5 1017 40.8
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.1e-142 511.9 1010 42.6
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.4e-142 510.8 820 46.2
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 7.0e-142 509.2 965 41.5
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.2e-141 508.4 1001 42.9
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.2e-141 508.4 1011 41.5
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 2.3e-140 504.2 846 44.2
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 9.5e-139 498.8 1019 40.8
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 8.9e-137 492.3 1016 39.7
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 9.8e-136 488.8 1029 39.7
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.9e-135 487.3 923 41.4
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 1.1e-134 485.3 1015 41.2
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.2e-133 481.9 1039 39.7
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 2.7e-133 480.7 1013 39.5
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 4.6e-133 479.9 1017 39.1
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 6.0e-133 479.6 1016 40.3
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 7.8e-133 479.2 1011 39.1
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 8.9e-129 465.7 940 40.7
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.5e-128 464.9 1032 40.5
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 2.6e-128 464.2 1031 39.4
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 5.8e-128 463.0 918 40.7
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 9.9e-128 462.2 1037 40.3
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.4e-126 458.4 766 44.6
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.4e-126 457.6 989 40.8
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.2e-125 455.3 1025 38.1
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 6.0e-125 453.0 938 40.4
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 3.9e-124 450.3 1009 40.0
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 3.3e-123 447.2 919 40.9
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 5.2e-121 439.9 939 40.3
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.4e-120 437.2 868 41.1
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 4.2e-118 430.3 1091 39.3
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.2e-117 428.7 861 41.8
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 7.3e-115 419.5 917 36.4
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 2.1e-114 417.9 986 38.0
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.8e-114 417.5 1009 36.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.1e-113 415.6 1083 38.0
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.4e-113 414.5 1063 37.2
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 2.9e-111 407.5 1016 37.8
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 4.6e-109 400.2 994 37.2
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 3.9e-108 397.1 1023 37.0
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 6.6e-108 396.4 917 35.8
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 4.3e-107 393.7 1018 36.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.5e-99 368.6 1018 37.4
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 4.3e-99 367.1 1003 35.3
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 7.4e-99 366.3 996 35.9
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 2.4e-97 361.3 1025 37.2
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.3e-95 355.5 1043 34.2
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 1.6e-93 348.6 1000 33.5
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 4.6e-93 347.1 1027 35.0
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 5.1e-92 343.6 935 37.0
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.6e-88 331.3 954 35.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 8.4e-87 326.2 948 35.4
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 2.5e-86 324.7 888 34.7
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 3.5e-85 320.9 625 42.6
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 6.0e-85 320.1 834 33.7
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 3.0e-84 317.8 868 36.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 3.0e-84 317.8 1115 33.1
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 6.7e-84 316.6 1006 35.5
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.9e-83 315.1 950 34.3
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 9.7e-83 312.8 1011 33.1
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.3e-76 291.6 1012 33.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 6.9e-73 280.0 1079 31.4
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 6.5e-63 246.9 986 34.2
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.4e-60 239.2 983 30.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 2.0e-56 225.3 155 76.1
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 9.7e-51 206.5 255 51.8
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 6.5e-47 193.7 158 67.7
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.2e-45 189.5 302 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.7e-34 152.5 1097 27.0
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 7.3e-30 137.1 468 33.8
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 3.6e-29 134.8 298 36.9
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 4.0e-28 131.3 97 71.1
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.0e-27 129.0 97 73.2
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.0e-25 120.6 183 42.6
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.2e-24 119.8 159 45.3
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.7e-24 118.6 73 75.3
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.9e-22 112.5 234 37.2
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 8.0e-21 107.1 1117 23.3
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.2e-17 95.1 143 44.8
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 7.1e-17 94.0 256 32.8
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 2.1e-13 82.4 187 31.6
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.1e-12 78.6 60 70.0
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 6.8e-12 77.4 60 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.6e-08 66.2 816 24.8
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.8e-08 63.9 93 51.6


User provided reference genes

Program Settings