Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 3.6e-126 454.9 227 100.0
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.2e-46 189.9 161 67.1
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 1.1e-45 187.6 178 62.9
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 2.2e-43 179.9 162 64.2
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.2e-41 174.1 176 56.2
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.6e-36 157.1 181 54.1
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 1.0e-35 154.5 178 53.9
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 5.0e-35 152.1 182 55.5
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 2.5e-34 149.8 106 76.4
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 3.2e-34 149.4 133 60.9
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 1.6e-33 147.1 177 50.8
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 4.7e-33 145.6 176 51.7
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.5e-31 140.6 182 49.5
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.8e-30 136.3 177 49.7
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 5.9e-28 128.6 177 49.7
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 7.7e-28 128.3 201 46.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 3.8e-27 125.9 177 45.8
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 3.2e-26 122.9 177 45.8
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 2.1e-25 120.2 113 57.5
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 2.3e-24 116.7 178 46.6
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 2.3e-24 116.7 181 45.9
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 3.0e-24 116.3 180 45.6
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 5.2e-24 115.5 148 48.6
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.2e-23 114.4 108 59.3
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 1.2e-23 114.4 171 46.2
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 2.6e-23 113.2 177 44.6
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 5.7e-23 112.1 179 44.1
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 5.7e-23 112.1 177 42.4
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 7.5e-23 111.7 168 45.2
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 2.8e-22 109.8 179 43.0
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 2.8e-22 109.8 178 43.3
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 9.1e-21 104.8 177 39.5
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 9.1e-21 104.8 161 42.9
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 9.1e-21 104.8 184 39.1
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 1.6e-20 104.0 179 43.0
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.6e-20 104.0 183 43.2
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 3.5e-20 102.8 176 43.2
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 1.0e-19 101.3 178 41.6
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 1.7e-19 100.5 180 43.9
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.7e-19 100.5 175 41.7
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 2.3e-19 100.1 176 42.0
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 2.3e-19 100.1 185 43.2
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 2.3e-19 100.1 178 42.7
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 5.0e-19 99.0 162 44.4
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 5.0e-19 99.0 163 42.9
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 1.9e-18 97.1 166 42.8
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 4.3e-18 95.9 144 47.2
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 4.3e-18 95.9 161 39.8
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 2.1e-17 93.6 158 43.7
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 2.1e-17 93.6 161 39.8
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 8.0e-17 91.7 134 45.5
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.8e-16 90.5 168 38.7
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 2.3e-16 90.1 176 39.2
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 3.0e-16 89.7 178 39.3
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 6.8e-16 88.6 163 42.3
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 1.2e-15 87.8 177 40.1
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 1.2e-15 87.8 115 51.3
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.5e-15 87.4 163 39.9
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 2.0e-15 87.0 176 37.5
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-15 87.0 233 33.5
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 3.4e-15 86.3 167 41.3
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 3.4e-15 86.3 115 50.4
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 7.5e-15 85.1 148 41.9
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 3.7e-14 82.8 199 38.2
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 4.9e-14 82.4 142 44.4
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 4.9e-14 82.4 117 40.2
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 6.4e-14 82.0 180 35.6
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 8.3e-14 81.6 188 35.6
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 1.1e-13 81.3 190 33.7
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 4.1e-13 79.3 236 32.2
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 4.1e-13 79.3 149 39.6
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 5.4e-13 79.0 147 39.5
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 7.0e-13 78.6 179 35.8
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 9.2e-13 78.2 155 39.4
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 2.0e-12 77.0 149 36.9
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 2.0e-12 77.0 117 38.5
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 2.7e-12 76.6 175 37.7
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 2.7e-12 76.6 163 39.9
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 1.0e-11 74.7 184 34.8
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.7e-11 73.9 183 37.7
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 2.3e-11 73.6 169 35.5
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 3.9e-11 72.8 132 39.4
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 3.9e-11 72.8 171 38.0
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 8.6e-11 71.6 166 36.7
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 2.5e-10 70.1 166 36.1
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 2.5e-10 70.1 161 36.6
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 3.3e-10 69.7 117 41.0
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 1.2e-09 67.8 166 36.1
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.1e-09 67.0 120 37.5
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 3.6e-09 66.2 161 33.5
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 4.7e-09 65.9 106 38.7
TAR626G0200 Trochodendron aralioides HOM05D005864 ORTHO05D006770 6.2e-09 65.5 105 41.9
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 8.0e-09 65.1 152 34.9
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 1.0e-08 64.7 171 33.9
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 4.0e-08 62.8 181 32.0
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.5e-07 60.8 202 32.2
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.0e-07 60.5 152 33.6
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 3.4e-07 59.7 179 35.2
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 5.8e-07 58.9 179 34.1
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 5.8e-07 58.9 161 36.0
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 7.5e-07 58.5 102 39.2
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 9.8e-07 58.2 146 34.9
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.9e-06 56.6 179 35.2
TPR.G1791 Trifolium pratense HOM05D005864 ORTHO05D006770 4.9e-06 55.8 66 54.5


User provided reference genes

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