Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 3.4e-224 781.9 606 100.0
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.9e-159 565.8 636 69.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 4.3e-158 562.4 605 77.5
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.5e-147 527.3 601 81.0
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.6e-144 515.8 606 68.6
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.4e-140 504.2 606 77.2
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 3.1e-140 503.1 629 68.4
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.4e-137 493.4 606 70.8
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 6.0e-136 488.8 499 70.3
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 5.6e-134 482.3 500 76.0
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 6.2e-133 478.8 498 77.9
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.1e-132 476.5 613 66.6
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 3.1e-132 476.5 498 69.9
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.1e-132 476.5 603 74.1
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 4.0e-132 476.1 606 74.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 9.0e-132 474.9 463 77.1
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.3e-130 471.1 606 72.9
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.8e-130 469.5 505 68.9
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.9e-130 469.2 605 74.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 4.9e-130 469.2 654 64.5
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-129 467.2 500 74.8
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.4e-129 466.8 510 72.9
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 3.2e-129 466.5 655 68.9
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.6e-128 464.2 571 71.8
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 8.7e-127 458.4 499 74.9
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.1e-126 458.0 607 74.1
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 2.8e-125 453.4 499 72.7
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 3.1e-124 449.9 606 71.9
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 4.5e-123 446.0 606 72.9
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 5.8e-123 445.7 500 73.0
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 7.6e-123 445.3 508 72.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.3e-119 433.7 499 69.3
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 3.9e-119 433.0 508 71.1
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.1e-119 432.6 594 72.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 4.8e-117 426.0 603 70.5
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 6.3e-117 425.6 606 71.8
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.4e-116 424.5 499 73.9
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 3.4e-115 419.9 499 71.1
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 3.2e-113 413.3 499 71.9
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.2e-112 411.4 509 62.9
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 7.9e-112 408.7 606 70.8
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 7.9e-112 408.7 499 69.9
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.0e-111 408.3 526 62.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.8e-111 407.5 500 70.0
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.8e-111 407.5 500 70.2
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 6.7e-111 405.6 498 65.7
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 2.5e-110 403.7 272 73.2
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.1e-108 398.3 419 84.0
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 6.9e-108 395.6 498 71.3
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-106 391.7 273 71.1
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.0e-106 391.7 272 72.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.2e-106 390.6 272 72.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.2e-106 390.6 606 69.1
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 2.9e-106 390.2 500 69.8
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.8e-106 389.8 273 70.7
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 5.0e-106 389.4 272 72.1
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.1e-105 388.3 271 70.1
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.4e-105 387.9 272 67.6
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.9e-105 387.5 606 69.5
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.5e-105 387.1 273 70.0
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.2e-105 386.7 270 71.9
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.6e-104 384.4 264 69.7
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.9e-104 382.1 544 63.8
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 3.9e-103 379.8 272 68.4
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 6.7e-103 379.0 496 60.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.5e-102 377.9 545 63.3
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 2.5e-102 377.1 271 69.0
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 4.3e-102 376.3 604 67.7
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.2e-101 374.0 271 68.6
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 6.3e-101 372.5 273 68.1
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.5e-99 367.9 606 68.6
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.7e-98 364.4 276 67.0
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.2e-97 360.1 453 49.9
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 5.5e-97 359.4 287 63.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.1e-96 355.9 269 63.9
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 8.8e-95 352.1 464 57.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 8.8e-95 352.1 287 62.4
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 3.3e-94 350.1 272 62.9
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 7.4e-94 349.0 269 63.9
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.4e-92 344.7 272 63.2
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 5.3e-92 342.8 272 60.7
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 1.2e-91 341.7 272 61.8
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.6e-91 341.3 427 69.1
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.6e-91 340.5 272 62.1
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 5.9e-91 339.3 272 61.8
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.7e-90 337.8 272 61.4
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.9e-90 337.0 531 63.3
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 5.0e-90 336.3 272 61.4
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 6.5e-90 335.9 273 61.2
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 3.6e-88 330.1 273 60.4
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.8e-87 327.8 297 56.6
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.3e-87 327.4 239 67.8
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 3.3e-86 323.6 234 70.1
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.7e-85 321.2 259 61.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 3.7e-85 320.1 267 58.8
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.5e-65 255.0 164 77.4
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 6.4e-53 213.0 141 73.0
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.9e-49 201.4 147 63.9
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.0e-42 179.1 123 72.4
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.6e-40 170.6 237 43.0
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.8e-39 168.3 239 41.4
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.9e-37 161.0 246 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.4e-36 157.9 275 38.2
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 7.1e-36 156.4 232 73.3
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.7e-34 151.8 272 35.7
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.1e-32 142.9 128 57.8
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.1e-32 142.9 243 40.7
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.1e-31 141.0 127 58.3
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 9.9e-30 136.0 108 85.2
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.2e-29 134.8 106 61.3
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.1e-27 128.3 89 68.5
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 3.0e-26 124.4 287 31.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.1e-25 122.5 109 57.8
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.7e-21 108.6 100 79.0
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 4.9e-21 107.1 199 31.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 5.4e-20 103.6 70 70.0
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 4.3e-17 94.0 260 30.8
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.8e-15 88.6 134 42.5
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.0e-10 71.2 75 48.0
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 7.4e-09 66.6 40 80.0
SEGI_00210 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 8.2e-08 63.2 48 62.5
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.1e-07 62.8 39 82.1
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.8e-07 62.0 39 74.4
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 6.9e-07 60.1 63 85.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 9.0e-07 59.7 70 77.1
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 5.8e-06 57.0 72 38.9
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.0e-05 56.2 67 41.8
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.0e-05 56.2 37 64.9


User provided reference genes

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