Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.2e-175 617.1 380 100.0
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 8.9e-170 600.5 380 98.4
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.6e-129 466.1 373 69.7
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.1e-127 460.7 373 69.2
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 7.1e-119 431.4 376 66.2
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 7.9e-102 374.8 377 59.2
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 2.6e-100 369.8 325 65.2
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.0e-97 360.1 378 55.3
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 2.6e-97 359.8 378 55.0
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.6e-97 359.8 374 56.1
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 6.7e-93 345.1 371 55.0
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 9.7e-92 341.3 405 51.4
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.3e-91 340.9 382 52.6
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 3.7e-91 339.3 379 53.6
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 6.3e-91 338.6 374 55.3
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.6e-89 334.0 380 52.6
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 2.6e-89 333.2 362 51.9
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 1.0e-88 331.3 372 51.9
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.7e-88 330.5 378 53.7
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 2.2e-88 330.1 372 52.4
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 9.4e-87 324.7 374 54.8
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.6e-86 323.9 390 52.3
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 8.8e-85 318.2 373 50.9
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 2.6e-84 316.6 376 52.4
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 5.7e-84 315.5 377 52.0
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 7.5e-84 315.1 373 49.6
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 7.5e-84 315.1 377 52.0
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 4.8e-83 312.4 381 50.9
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 1.8e-82 310.5 375 49.9
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 4.1e-82 309.3 377 49.3
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 9.1e-82 308.1 375 49.6
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.2e-81 307.8 375 51.7
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 3.5e-81 306.2 370 48.9
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 5.9e-81 305.4 394 47.7
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 5.0e-80 302.4 366 51.6
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.1e-79 301.2 366 51.1
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 2.5e-79 300.1 373 48.0
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 5.5e-79 298.9 395 46.8
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 9.4e-79 298.1 370 50.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 2.7e-78 296.6 376 48.1
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 3.6e-78 296.2 386 46.9
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 4.7e-78 295.8 376 49.2
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 4.7e-78 295.8 378 48.7
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 4.7e-78 295.8 375 47.5
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.0e-77 294.7 387 50.1
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 1.4e-77 294.3 374 48.7
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.8e-77 293.9 377 48.3
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.8e-77 293.9 376 47.6
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.3e-77 293.5 372 48.9
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.3e-77 293.5 395 46.6
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 2.3e-77 293.5 369 50.4
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 4.0e-77 292.7 387 47.5
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 5.2e-77 292.4 380 47.6
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 8.8e-77 291.6 383 47.8
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.2e-76 291.2 378 48.4
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 2.6e-76 290.0 380 49.2
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 9.8e-76 288.1 394 45.2
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 1.3e-75 287.7 387 45.7
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 1.7e-75 287.3 375 49.1
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.7e-75 287.3 376 49.5
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.7e-75 287.3 384 46.1
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.2e-75 287.0 376 49.2
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 3.7e-75 286.2 371 47.7
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 4.8e-75 285.8 383 45.2
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 4.8e-75 285.8 366 49.7
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 6.3e-75 285.4 381 46.2
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 8.3e-75 285.0 362 50.6
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 8.3e-75 285.0 374 49.2
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.1e-74 284.6 374 46.5
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.4e-74 284.3 395 45.1
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.4e-74 283.5 395 47.1
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.4e-74 283.5 331 52.9
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 4.1e-74 282.7 378 45.5
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 4.1e-74 282.7 378 45.5
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 9.1e-74 281.6 372 45.7
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 9.1e-74 281.6 376 48.7
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.2e-73 281.2 376 48.4
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 2.0e-73 280.4 373 46.6
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 2.7e-73 280.0 367 48.5
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 5.9e-73 278.9 371 45.8
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 5.9e-73 278.9 387 47.5
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 2.9e-72 276.6 371 45.6
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.1e-71 274.6 375 44.8
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.1e-71 274.6 342 51.5
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 9.5e-71 271.6 373 46.4
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.8e-70 270.0 407 43.0
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 8.9e-69 265.0 388 43.3
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 2.6e-68 263.5 375 43.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 3.4e-68 263.1 373 45.6
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 3.4e-68 263.1 387 45.0
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 6.3e-67 258.8 374 44.1
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.4e-66 256.9 372 44.6
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 4.1e-66 256.1 376 43.4
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.2e-65 254.6 382 42.4
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 1.1e-63 248.1 361 45.2
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 8.0e-62 241.9 369 41.5
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 8.0e-62 241.9 379 43.8
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 8.0e-62 241.9 339 46.6
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 4.0e-61 239.6 156 75.6
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 4.0e-61 239.6 340 46.8
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 4.9e-59 232.6 373 43.2
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 8.3e-59 231.9 355 43.1
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 3.2e-58 229.9 301 47.2
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 7.0e-58 228.8 387 40.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.3e-56 224.6 357 41.5
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 8.0e-54 215.3 314 46.5
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.8e-53 214.2 369 36.9
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.3e-53 213.8 366 37.2
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.2e-52 211.5 352 43.2
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 2.2e-51 207.2 165 64.2
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 3.7e-51 206.5 367 38.4
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.1e-50 204.9 339 42.2
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.6e-49 201.1 121 89.3
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 1.3e-48 198.0 312 44.6
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 6.2e-46 189.1 275 46.2
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 6.8e-45 185.7 367 36.2
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 3.7e-43 179.9 156 62.2
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.0e-40 171.8 375 39.2
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.0e-40 171.8 300 43.3
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 1.3e-40 171.4 151 60.3
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 1.1e-37 161.8 281 40.2
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 4.0e-37 159.8 153 48.4
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 4.4e-36 156.4 102 73.5
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 2.9e-35 153.7 156 53.8
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 8.4e-35 152.1 411 28.2
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 2.4e-34 150.6 373 31.1
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 2.7e-33 147.1 392 33.9
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 1.0e-32 145.2 170 52.9
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.7e-32 144.4 98 72.4
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.5e-31 141.4 375 29.1
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 7.3e-31 139.0 98 69.4
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 6.4e-27 125.9 153 53.6
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 4.3e-23 113.2 106 66.0
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 4.8e-22 109.8 366 24.9
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 1.8e-21 107.8 224 38.8
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 7.1e-18 95.9 69 71.0
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 1.6e-17 94.7 212 39.2
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 3.5e-17 93.6 57 82.5
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 6.0e-17 92.8 127 38.6
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 3.0e-16 90.5 127 37.8
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 8.7e-16 89.0 131 36.6
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.5e-15 88.2 83 60.2
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 4.0e-13 80.1 66 54.5
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 5.3e-13 79.7 369 25.5
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 2.6e-12 77.4 83 56.6
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.3e-11 75.1 109 43.1
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.8e-11 73.6 86 45.3
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 8.4e-11 72.4 130 30.8
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.1e-10 72.0 118 42.4
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 1.9e-10 71.2 69 52.2
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.9e-10 71.2 66 56.1
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.2e-10 70.5 77 48.1
PRCOL_00000652 Prasinoderma coloniale HOM05D001340 ORTHO05D005342 7.9e-09 65.9 382 34.8
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 1.3e-06 58.5 64 54.7
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 4.8e-06 56.6 60 46.7


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