Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.1e-262 909.4 466 100.0
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.9e-246 855.5 442 99.3
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.8e-223 778.1 419 95.9
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.5e-222 775.4 419 95.7
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.3e-110 402.9 378 60.6
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 7.0e-108 395.2 436 54.1
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 2.8e-101 373.2 427 54.3
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.7e-93 347.4 426 50.2
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.2e-93 347.1 555 43.6
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.1e-73 281.6 428 43.2
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.1e-64 250.8 423 41.1
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 6.2e-64 249.2 443 40.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.0e-63 246.5 441 39.7
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 5.2e-63 246.1 425 39.8
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.2e-63 246.1 420 42.9
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 8.9e-63 245.4 433 39.3
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.0e-62 244.2 419 40.3
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 2.2e-61 240.7 425 39.1
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.9e-60 237.7 425 40.7
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.4e-60 237.3 443 37.0
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 3.5e-59 233.4 414 38.9
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.1e-57 228.4 421 39.2
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.1e-57 228.4 421 39.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 3.3e-57 226.9 389 40.4
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 7.3e-57 225.7 423 37.6
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.1e-55 221.9 436 37.8
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.4e-55 221.5 438 37.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.2e-54 218.4 423 37.8
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 7.6e-54 215.7 433 37.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.3e-53 214.9 423 37.6
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 8.4e-53 212.2 427 36.8
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.4e-52 211.5 365 40.3
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.9e-52 211.1 311 41.8
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.0e-50 205.3 418 36.4
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.3e-50 204.9 427 36.5
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 6.6e-50 202.6 428 35.5
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 2.5e-49 200.7 416 38.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.2e-48 198.4 404 37.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.1e-48 197.6 464 38.1
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 3.6e-48 196.8 424 37.7
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 4.0e-47 193.4 315 39.0
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 1.2e-46 191.8 416 35.8
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 9.9e-46 188.7 428 37.4
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.3e-45 188.3 424 36.8
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 3.8e-45 186.8 397 34.8
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.4e-44 184.9 416 35.1
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.9e-44 184.5 393 34.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 5.4e-44 183.0 423 32.9
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.3e-44 182.2 424 33.7
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.7e-42 177.9 430 33.0
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.3e-42 177.6 423 32.9
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.3e-42 177.6 423 32.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 6.6e-42 176.0 439 34.4
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.3e-41 173.7 423 32.4
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.3e-41 173.3 389 35.7
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 7.3e-41 172.6 397 33.8
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.1e-40 171.0 426 34.0
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 3.1e-39 167.2 422 32.7
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 3.1e-39 167.2 407 34.9
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 4.0e-39 166.8 425 33.4
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 5.3e-39 166.4 339 35.7
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 6.9e-39 166.0 409 33.0
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 2.0e-38 164.5 407 34.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 5.8e-38 162.9 399 33.6
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 7.6e-38 162.5 400 34.0
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 9.9e-38 162.2 400 34.5
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 2.2e-37 161.0 395 34.7
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.4e-36 158.3 439 31.0
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 2.4e-36 157.5 422 33.4
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 2.4e-36 157.5 419 33.7
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.2e-36 157.1 425 31.3
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 4.2e-36 156.8 433 32.3
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 5.4e-36 156.4 433 33.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.5e-35 153.7 404 32.4
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 4.6e-35 153.3 408 32.1
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.3e-34 151.8 425 30.8
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 8.7e-34 149.1 390 34.9
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.5e-33 148.3 435 32.4
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 7.4e-33 146.0 390 35.6
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.6e-32 144.8 434 32.0
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 2.1e-32 144.4 420 30.0
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.8e-32 144.1 421 31.1
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.1e-31 142.1 421 30.4
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.1e-31 142.1 461 30.4
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.4e-31 141.7 393 34.1
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.1e-31 140.6 436 32.8
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 4.0e-31 140.2 430 30.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 6.9e-31 139.4 411 32.6
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 9.0e-31 139.0 449 31.6
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.2e-30 138.7 398 32.7
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 4.5e-30 136.7 424 30.7
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 4.5e-30 136.7 303 36.6
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 4.5e-30 136.7 452 30.5
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 9.9e-30 135.6 298 35.6
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.4e-28 131.0 402 31.6
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 2.4e-28 131.0 386 29.3
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.3e-28 129.0 452 29.4
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.6e-27 128.3 344 30.8
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 6.0e-27 126.3 314 32.5
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 7.9e-27 125.9 389 29.6
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 2.3e-26 124.4 348 31.3
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.7e-24 117.1 279 30.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 3.4e-22 110.5 441 26.3
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.5e-22 110.2 382 28.8
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.5e-20 104.4 176 39.8
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.2e-19 102.1 415 27.0
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.0e-19 99.8 381 27.8
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 6.0e-19 99.8 412 27.7
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 8.7e-18 95.9 97 58.8
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.1e-15 89.0 340 29.7
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.4e-15 87.8 374 25.4
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 5.3e-15 86.7 451 24.2
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 3.8e-13 80.5 92 42.4
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.2e-11 75.5 85 49.4
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 8.2e-08 62.8 77 41.6
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 4.1e-07 60.5 155 31.6
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 5.3e-07 60.1 46 58.7
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.3e-07 60.1 37 81.1
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 9.0e-07 59.3 436 24.8


User provided reference genes

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