Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028990 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D001296 3.2e-43 177.9 86 100.0
Dinv37853 Davidia involucrata HOM05D000749 ORTHO05D001296 7.5e-24 113.6 81 70.4
Actinidia32197 Actinidia chinensis HOM05D000749 ORTHO05D001296 9.7e-24 113.2 70 77.1
Rhsim08G0240600 Rhododendron simsii HOM05D002677 ORTHO05D002906 3.7e-23 111.3 70 78.6
vmacro15045 Vaccinium macrocarpon HOM05D002029 ORTHO05D002158 1.4e-22 109.4 73 75.3
Lj5A33G46 Lonicera japonica HOM05D000749 ORTHO05D001296 5.3e-22 107.5 70 75.7
Lsat_1_v5_gn_1_37941 Lactuca sativa HOM05D002029 ORTHO05D002158 7.0e-22 107.1 79 60.8
Nitab4.5_0005192g0030 Nicotiana tabacum HOM05D000749 ORTHO05D001296 1.3e-20 102.8 81 65.4
AUR62009913 Chenopodium quinoa HOM05D000030 ORTHO05D001296 1.7e-20 102.4 86 62.8
Ciclev10026604m.g Citrus clementina HOM05D000749 ORTHO05D001296 2.2e-20 102.1 82 61.0
AUR62001452 Chenopodium quinoa HOM05D000749 ORTHO05D001296 3.8e-20 101.3 70 68.6
Hma1.2p1_0229F.1_g096700 Hydrangea macrophylla HOM05D000749 ORTHO05D001296 1.9e-19 99.0 74 63.5
Nitab4.5_0000189g0100 Nicotiana tabacum HOM05D000749 ORTHO05D001296 1.9e-19 99.0 81 63.0
Sopen12g023850 Solanum pennellii HOM05D000749 ORTHO05D001296 2.5e-19 98.6 81 61.7
Potri.003G068100 Populus trichocarpa HOM05D000749 ORTHO05D001296 4.2e-19 97.8 65 70.8
Nn8g38593 Nelumbo nucifera HOM05D000749 ORTHO05D001296 5.5e-19 97.4 65 73.8
Ah.08g217020 Amaranthus hybridus HOM05D002029 ORTHO05D001296 7.2e-19 97.1 70 68.6
PGSC0003DMG400004364 Solanum tuberosum HOM05D000749 ORTHO05D001296 7.2e-19 97.1 81 61.7
Solyc12g049370.2 Solanum lycopersicum HOM05D000749 ORTHO05D001296 9.4e-19 96.7 81 60.5
Atru.chr1.4045 Acer truncatum HOM05D000749 ORTHO05D001296 1.2e-18 96.3 78 59.0
MBI04_g36069_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D001296 1.2e-18 96.3 66 68.2
Eucgr.J02803 Eucalyptus grandis HOM05D000749 ORTHO05D001296 1.6e-18 95.9 73 60.3
SalBow6G4626 Salvia bowleyana HOM05D000749 ORTHO05D001296 1.6e-18 95.9 70 70.0
SalBow6G2406 Salvia bowleyana HOM05D000749 ORTHO05D001296 3.6e-18 94.7 70 70.0
QL05p003896 Quercus lobata HOM05D000749 ORTHO05D001296 4.7e-18 94.4 69 65.2
Sabra03G0039900 Salix brachista HOM05D002029 ORTHO05D002158 6.1e-18 94.0 65 67.7
Hund18680 Selenicereus undatus HOM05D000749 ORTHO05D001296 6.1e-18 94.0 70 64.3
CANSAT56G2877 Cannabis sativa HOM05D000749 ORTHO05D001296 8.0e-18 93.6 81 55.6
Haze_16055 Corylus avellana HOM05D000749 ORTHO05D001296 8.0e-18 93.6 70 65.7
ECA247G1406 Erigeron canadensis HOM05D000749 ORTHO05D001296 1.0e-17 93.2 74 58.1
RcHm_v2.0_Chr2g0146231 Rosa chinensis HOM05D000749 ORTHO05D001296 1.0e-17 93.2 66 68.2
Lj3g0014096 Lotus japonicus HOM05D000749 ORTHO05D001296 1.4e-17 92.8 69 66.7
SalBow6G6141 Salvia bowleyana HOM05D000749 ORTHO05D001296 1.4e-17 92.8 67 71.6
TWI59G0744 Tripterygium wilfordii HOM05D000749 ORTHO05D001296 1.4e-17 92.8 84 54.8
Migut.I01095 Erythranthe guttata HOM05D000749 ORTHO05D001296 3.0e-17 91.7 71 63.4
FvH4_6g35060 Fragaria vesca HOM05D000749 ORTHO05D001296 3.0e-17 91.7 66 66.7
FAN14G4991 Fragaria x ananassa HOM05D000749 ORTHO05D001296 3.0e-17 91.7 66 66.7
CiPaw.02G134400 Carya illinoinensis HOM05D000749 ORTHO05D001296 5.2e-17 90.9 70 65.7
Medtr8g021233 Medicago truncatula HOM05D000749 ORTHO05D001296 5.2e-17 90.9 69 66.7
EL10Ac7g16435 Beta vulgaris HOM05D000749 ORTHO05D001296 6.8e-17 90.5 70 65.7
Cc04_g01140 Coffea canephora HOM05D000749 ORTHO05D001296 6.8e-17 90.5 68 63.2
FAN05G4377 Fragaria x ananassa HOM05D000749 ORTHO05D001296 6.8e-17 90.5 66 65.2
Glyma.16G009300 Glycine max HOM05D000749 ORTHO05D001296 6.8e-17 90.5 69 65.2
FAN09G4379 Fragaria x ananassa HOM05D000749 ORTHO05D001296 1.2e-16 89.7 66 65.2
Gohir.D06G149600 Gossypium hirsutum HOM05D000749 ORTHO05D001296 1.2e-16 89.7 81 56.8
Gorai.010G174500 Gossypium raimondii HOM05D000749 ORTHO05D001296 1.2e-16 89.7 81 56.8
Oeu020353.1 Olea europaea HOM05D000749 ORTHO05D001296 2.0e-16 89.0 64 65.6
Sc12g0010720 Simmondsia chinensis HOM05D000749 ORTHO05D001296 2.0e-16 89.0 70 62.9
Manes.04G147100 Manihot esculenta HOM05D000749 ORTHO05D001296 2.6e-16 88.6 70 58.6
CARHR018000 Cardamine hirsuta HOM05D000749 ORTHO05D001296 3.4e-16 88.2 70 58.6
TPR.G16736 Trifolium pratense HOM05D000749 ORTHO05D001296 3.4e-16 88.2 69 62.3
Prupe.3G038400 Prunus persica HOM05D000749 ORTHO05D001296 4.4e-16 87.8 74 59.5
Thecc.06G123100 Theobroma cacao HOM05D000749 ORTHO05D001296 7.5e-16 87.0 68 63.2
ClCG09G001100 Citrullus lanatus HOM05D000749 ORTHO05D001296 9.8e-16 86.7 68 60.3
Sed0015945 Sechium edule HOM05D000749 ORTHO05D001296 9.8e-16 86.7 68 60.3
Aqoxy7G04092 Aquilegia oxysepala HOM05D000749 ORTHO05D001296 1.3e-15 86.3 68 61.8
COL.COLO4_30729 Corchorus olitorius HOM05D000749 ORTHO05D001296 1.3e-15 86.3 68 61.8
Psat4g167760 Pisum sativum HOM05D000749 ORTHO05D001296 1.7e-15 85.9 68 60.3
HanXRQChr08g0221031 Helianthus annuus HOM05D000749 ORTHO05D001296 2.2e-15 85.5 64 59.4
AL1G29670 Arabidopsis lyrata HOM05D000749 ORTHO05D001296 2.8e-15 85.1 70 54.3
Zm00001eb182590 Zea mays HOM05D000749 ORTHO05D001296 2.8e-15 85.1 64 62.5
Gohir.A06G143750 Gossypium hirsutum HOM05D000749 ORTHO05D001296 4.8e-15 84.3 75 57.3
Os02g0565100 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D001296 4.8e-15 84.3 64 60.9
MSTRG.10937 Avicennia marina HOM05D000749 ORTHO05D001296 6.3e-15 84.0 69 59.4
PGR102G0835 Punica granatum HOM05D000749 ORTHO05D001296 6.3e-15 84.0 70 60.0
VMungo0331G0921 Vigna mungo HOM05D000749 ORTHO05D001296 6.3e-15 84.0 69 59.4
AT1G17410 Arabidopsis thaliana HOM05D000749 ORTHO05D001296 8.3e-15 83.6 70 54.3
MELO3C024340.2 Cucumis melo HOM05D000749 ORTHO05D001296 8.3e-15 83.6 68 57.4
PSO421G0200 Papaver somniferum HOM05D000749 ORTHO05D001296 8.3e-15 83.6 74 56.8
MD17G1165300 Malus domestica HOM05D000749 ORTHO05D001296 3.1e-14 81.6 66 59.1
TAR624G0298 Trochodendron aralioides HOM05D002677 ORTHO05D002906 3.1e-14 81.6 55 69.1
CsaV3_7G034310 Cucumis sativus L. HOM05D000749 ORTHO05D001296 4.1e-14 81.3 68 57.4
Phvul.010G128100 Phaseolus vulgaris HOM05D000749 ORTHO05D001296 4.1e-14 81.3 69 58.0
SGA_v2.0_scaffold122G33324 Striga asiatica HOM05D000749 ORTHO05D001296 7.0e-14 80.5 69 56.5
Thhalv10008875m.g Eutrema salsugineum HOM05D000749 ORTHO05D001296 9.1e-14 80.1 69 53.6
GSVIVG01016728001 Vitis vinifera HOM05D000749 ORTHO05D001296 9.1e-14 80.1 55 67.3
CDE11G1256 Ceratophyllum demersum HOM05D000749 ORTHO05D001296 1.2e-13 79.7 64 59.4
Lalb_Chr10g0101401 Lupinus albus HOM05D000749 ORTHO05D001296 1.6e-13 79.3 61 63.9
BcaC07g38855 Brassica carinata HOM05D000749 ORTHO05D001296 2.0e-13 79.0 61 57.4
C08p17920 Brassica napus HOM05D002677 ORTHO05D002906 2.0e-13 79.0 61 57.4
BolC8t49424H Brassica oleracea HOM05D000749 ORTHO05D001296 2.0e-13 79.0 61 57.4
BraA08t35023Z Brassica rapa HOM05D002677 ORTHO05D002906 3.5e-13 78.2 61 57.4
BcaB03g13000 Brassica carinata HOM05D000749 ORTHO05D001296 5.9e-13 77.4 61 55.7
THA.LOC104813962 Tarenaya hassleriana HOM05D000749 ORTHO05D001296 5.9e-13 77.4 70 52.9
Carub.0001s1717 Capsella rubella HOM05D000749 ORTHO05D001296 1.3e-12 76.3 65 53.8
A08p30910 Brassica napus HOM05D002677 ORTHO05D002906 2.9e-12 75.1 61 54.1
DCAR_026420 Daucus carota HOM05D000749 ORTHO05D001296 2.9e-12 75.1 60 56.7
Aa31LG7G2280 Aethionema arabicum HOM05D000749 ORTHO05D001296 1.9e-11 72.4 61 54.1
ATR0006G045 Amborella trichopoda HOM05D000749 ORTHO05D001296 6.8e-09 63.9 70 41.4
Mapoly0224s0010 Marchantia polymorpha HOM05D000749 ORTHO05D001296 3.4e-08 61.6 60 50.0
MBI19_g05295_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D001296 6.3e-07 57.4 46 58.7
SMO180G0013 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 9.2e-06 53.5 60 41.7


User provided reference genes

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