Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.3e-173 610.5 323 100.0
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.8e-170 600.9 327 98.2
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-144 515.4 283 85.5
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 5.5e-144 514.6 274 88.7
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 6.0e-143 511.1 281 85.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.4e-139 500.0 272 86.4
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.9e-139 497.7 264 87.5
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.9e-136 489.6 286 80.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.9e-136 489.6 275 84.0
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.2e-136 488.4 275 84.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 9.3e-136 487.3 293 79.9
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-135 486.9 293 79.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.6e-135 486.5 290 77.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.1e-135 486.1 266 86.1
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.5e-135 485.3 286 80.8
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 3.5e-135 485.3 272 84.2
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.6e-135 485.0 293 80.2
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 6.0e-135 484.6 272 84.2
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.3e-134 483.4 293 79.5
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 2.3e-134 482.6 284 79.6
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.0e-134 482.3 274 81.8
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.0e-134 482.3 297 77.4
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.0e-134 482.3 288 80.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.9e-134 481.9 291 80.4
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.7e-134 481.1 265 84.2
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 6.7e-134 481.1 293 78.2
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 6.7e-134 481.1 308 75.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.1e-133 480.3 302 76.2
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.1e-133 480.3 293 76.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.1e-133 480.3 266 83.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.5e-133 479.9 261 84.7
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.9e-133 479.6 275 82.2
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.3e-133 478.4 288 78.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 4.3e-133 478.4 297 76.1
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 5.7e-133 478.0 301 76.7
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 9.6e-133 477.2 261 85.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 9.6e-133 477.2 277 80.1
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.3e-132 476.9 269 81.4
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.3e-132 476.9 270 81.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.6e-132 476.5 265 83.4
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.1e-132 476.1 287 78.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.1e-132 476.1 295 76.3
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.8e-132 475.7 258 83.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 275 80.4
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 283 78.8
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 283 78.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 283 79.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.8e-132 475.7 275 80.4
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 3.7e-132 475.3 274 83.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.8e-132 474.9 301 76.1
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.8e-132 474.9 292 77.4
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 8.2e-132 474.2 265 83.0
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.2e-132 474.2 275 80.0
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 8.2e-132 474.2 264 84.1
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.8e-131 473.0 275 80.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.8e-131 473.0 295 77.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.8e-131 473.0 270 80.0
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.8e-131 473.0 306 74.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.4e-131 472.6 284 78.2
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 4.1e-131 471.9 285 78.9
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.1e-131 471.9 295 77.3
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 5.3e-131 471.5 284 78.2
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 5.3e-131 471.5 293 77.1
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.9e-131 471.1 267 80.9
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 9.0e-131 470.7 286 77.3
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.2e-130 470.3 286 77.3
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.0e-130 469.5 285 78.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.0e-130 469.5 289 77.5
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.0e-130 469.5 283 79.9
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.6e-130 469.2 285 78.6
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.6e-130 469.2 285 78.6
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.6e-130 469.2 262 83.2
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.6e-130 469.2 289 77.2
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 3.4e-130 468.8 269 80.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.4e-130 468.8 280 80.0
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 7.6e-130 467.6 284 79.2
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.3e-129 466.8 286 76.6
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.3e-129 466.8 289 77.5
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.7e-129 466.5 257 84.0
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 3.8e-129 465.3 285 77.9
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.8e-129 465.3 258 83.3
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 5.0e-129 464.9 293 75.8
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 6.5e-129 464.5 284 77.8
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.1e-128 463.8 291 77.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.5e-128 462.6 284 77.1
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.2e-128 462.2 296 74.7
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.2e-128 462.2 284 77.1
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.2e-128 461.8 289 76.8
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 5.5e-128 461.5 284 77.1
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.5e-128 461.5 290 75.9
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 7.2e-128 461.1 262 81.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-127 460.3 286 76.6
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.1e-127 459.5 288 75.0
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-127 459.1 286 76.2
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.7e-127 459.1 285 77.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 4.6e-127 458.4 285 77.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.6e-127 458.4 267 80.1
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 6.1e-127 458.0 295 74.6
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 6.1e-127 458.0 284 77.8
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 7.9e-127 457.6 286 76.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.0e-126 457.2 290 75.5
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.3e-126 456.8 267 81.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.3e-126 456.8 294 74.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-125 452.2 287 74.9
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 3.3e-125 452.2 242 86.8
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 7.4e-125 451.1 294 74.8
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 7.4e-125 451.1 294 74.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.8e-124 449.1 274 78.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 3.7e-124 448.7 292 74.3
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 4.8e-124 448.4 286 74.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 4.8e-124 448.4 286 74.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 6.3e-124 448.0 282 75.2
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 8.2e-124 447.6 290 75.2
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 6.9e-123 444.5 240 85.0
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 5.0e-121 438.3 258 79.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.0e-118 429.1 233 86.3
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 6.7e-118 427.9 262 77.5
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.2e-116 422.9 285 68.8
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 8.2e-116 421.0 283 73.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 5.3e-115 418.3 270 73.3
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.9e-113 412.5 221 87.3
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 3.8e-113 412.1 268 72.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 8.5e-113 411.0 219 85.8
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.7e-111 406.0 240 82.1
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 3.6e-111 405.6 217 85.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 8.8e-110 401.0 214 87.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.5e-109 400.2 221 83.7
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.7e-108 395.6 286 66.8
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-107 392.1 208 88.5
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.6e-106 390.2 266 69.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-106 390.2 276 67.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.7e-100 369.0 218 76.6
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.1e-99 365.5 242 74.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 4.7e-95 352.1 264 61.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.9e-89 332.8 275 59.3
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.6e-79 300.4 233 60.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 3.0e-78 296.2 154 89.6
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.7e-76 290.4 183 77.0
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.3e-73 280.8 152 86.8
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 5.0e-73 278.9 179 74.3
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-70 270.8 218 63.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 5.2e-70 268.9 149 81.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 4.4e-69 265.8 164 78.0
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.0e-66 256.9 170 73.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.3e-64 249.6 145 80.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 4.1e-59 232.6 126 84.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.2e-51 206.5 147 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.1e-39 167.2 159 56.6
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 8.4e-20 102.1 83 62.7
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 8.7e-17 92.0 66 71.2
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.1e-14 83.2 49 71.4
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.6e-13 80.5 69 62.3
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.0e-12 78.6 48 72.9


User provided reference genes

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