Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.9e-35 151.4 77 100.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.1e-15 86.3 43 93.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 8.2e-14 80.1 43 86.0
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 8.2e-14 80.1 43 86.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 1.8e-13 79.0 43 83.7
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 5.3e-13 77.4 43 81.4
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 9.1e-13 76.6 43 79.1
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 9.1e-13 76.6 44 77.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.5e-12 75.9 43 79.1
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 1.5e-12 75.9 43 76.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.4e-12 74.7 43 79.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.4e-12 74.7 43 76.7
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 4.5e-12 74.3 42 76.2
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 5.9e-12 73.9 43 72.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 7.7e-12 73.6 43 72.1
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.0e-11 73.2 43 74.4
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.3e-11 72.8 43 76.7
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 1.3e-11 72.8 43 76.7
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 1.3e-11 72.8 43 74.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 1.3e-11 72.8 43 72.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.7e-11 72.4 43 72.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 2.2e-11 72.0 43 76.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 2.2e-11 72.0 43 76.7
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 2.9e-11 71.6 43 69.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 2.9e-11 71.6 43 74.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 3.8e-11 71.2 43 72.1
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.8e-11 71.2 43 74.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.8e-11 71.2 43 74.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 3.8e-11 71.2 43 76.7
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 5.0e-11 70.9 43 72.1
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.5e-11 70.5 43 74.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 6.5e-11 70.5 43 69.8
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 6.5e-11 70.5 43 72.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 6.5e-11 70.5 43 69.8
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.5e-11 70.5 43 72.1
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 8.5e-11 70.1 44 68.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 8.5e-11 70.1 43 67.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-10 69.7 44 72.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-10 69.7 44 72.7
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 1.1e-10 69.7 43 69.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 1.1e-10 69.7 43 69.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-10 69.7 43 72.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.4e-10 69.3 43 69.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.4e-10 69.3 43 72.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.4e-10 69.3 43 72.1
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 1.9e-10 68.9 43 67.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.9e-10 68.9 43 69.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 2.5e-10 68.6 43 67.4
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 2.5e-10 68.6 43 65.1
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 3.2e-10 68.2 43 67.4
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 4.2e-10 67.8 43 67.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 5.5e-10 67.4 43 69.8
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 7.2e-10 67.0 43 67.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 7.2e-10 67.0 43 67.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 9.4e-10 66.6 43 67.4
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 9.4e-10 66.6 43 69.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 9.4e-10 66.6 43 69.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 9.4e-10 66.6 43 69.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.2e-09 66.2 43 67.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.2e-09 66.2 44 70.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 67.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.6e-09 65.9 43 60.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 62.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 62.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 60.5
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 65.1
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 69.8
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 2.1e-09 65.5 43 60.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.7e-09 65.1 43 62.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 3.6e-09 64.7 43 60.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 3.6e-09 64.7 45 64.4
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 3.6e-09 64.7 43 62.8
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.6e-09 64.3 43 65.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.6e-09 64.3 43 67.4
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 6.1e-09 63.9 41 65.9
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 6.1e-09 63.9 43 62.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 7.9e-09 63.5 45 68.9
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 7.9e-09 63.5 45 68.9
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.0e-08 63.2 43 62.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 1.4e-08 62.8 43 65.1
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.4e-08 62.8 43 60.5
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 1.4e-08 62.8 44 70.5
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 1.8e-08 62.4 43 60.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 1.8e-08 62.4 43 62.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 3.9e-08 61.2 43 55.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 3.9e-08 61.2 43 55.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.7e-08 60.5 43 65.1
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 8.8e-08 60.1 43 65.1
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.3e-07 58.2 40 62.5
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.7e-07 57.4 43 72.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.7e-06 55.8 43 53.5
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.7e-06 54.7 43 60.5
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.7e-06 54.7 43 48.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.3e-06 53.9 47 55.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 8.2e-06 53.5 43 55.8


User provided reference genes

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