Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.0e-142 510.0 252 100.0
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.0e-142 510.0 252 100.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 2.1e-135 485.7 250 93.6
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.8e-135 485.3 250 94.0
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.4e-131 472.2 249 91.2
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.7e-129 466.1 250 90.4
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.3e-129 465.7 249 89.2
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 3.3e-128 461.8 251 88.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 3.3e-128 461.8 251 88.8
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 4.3e-128 461.5 251 89.2
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.5e-128 460.3 250 90.4
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.6e-127 458.4 250 90.0
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 3.6e-127 458.4 250 90.0
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.8e-126 456.1 248 87.9
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.3e-126 455.7 276 82.6
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 2.3e-126 455.7 252 87.3
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 3.1e-126 455.3 252 86.9
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 4.0e-126 454.9 250 88.0
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 6.8e-126 454.1 251 87.6
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 6.8e-126 454.1 251 86.9
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.9e-126 453.8 248 86.7
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-125 453.4 250 88.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.2e-125 453.4 259 85.7
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.5e-125 453.0 250 88.0
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 2.6e-125 452.2 250 87.6
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.4e-125 451.4 251 86.9
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 5.8e-125 451.1 251 86.5
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.5e-125 450.7 250 87.6
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 9.9e-125 450.3 252 88.1
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.3e-124 449.9 264 84.1
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 1.3e-124 449.9 251 86.5
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.7e-124 449.5 251 86.9
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 3.7e-124 448.4 248 86.3
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.9e-123 446.0 251 86.1
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.9e-123 446.0 251 86.1
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.9e-123 446.0 249 87.1
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 2.4e-123 445.7 251 85.7
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 3.2e-123 445.3 250 85.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.1e-123 444.9 273 81.0
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.1e-123 444.9 250 86.4
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 4.1e-123 444.9 250 84.8
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 5.4e-123 444.5 250 84.8
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 9.2e-123 443.7 250 84.8
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.6e-122 443.0 250 85.2
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.6e-122 443.0 248 84.7
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 2.1e-122 442.6 250 84.4
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 4.6e-122 441.4 250 84.4
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 4.6e-122 441.4 251 84.1
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 4.6e-122 441.4 250 84.4
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 6.0e-122 441.0 291 77.7
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 7.8e-122 440.7 248 85.1
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 7.8e-122 440.7 250 84.4
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 1.0e-121 440.3 250 84.4
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.0e-121 440.3 250 84.0
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.0e-121 440.3 250 84.8
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.0e-121 440.3 253 84.6
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.7e-121 439.5 250 86.0
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 1.7e-121 439.5 250 83.6
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 2.3e-121 439.1 250 84.0
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 2.3e-121 439.1 253 84.6
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 2.3e-121 439.1 255 85.1
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.0e-121 438.7 252 85.7
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 3.9e-121 438.3 250 85.6
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 5.1e-121 438.0 249 84.3
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 6.6e-121 437.6 250 82.4
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.5e-120 436.4 256 84.0
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 3.3e-120 435.3 255 83.5
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 4.3e-120 434.9 250 84.8
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 4.3e-120 434.9 277 77.6
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 4.3e-120 434.9 254 83.9
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 5.6e-120 434.5 253 83.0
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 9.5e-120 433.7 254 83.1
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 1.6e-119 433.0 252 83.3
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 4.7e-119 431.4 251 82.9
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.8e-118 429.5 250 83.2
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 3.1e-118 428.7 235 86.4
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 5.2e-118 427.9 247 81.0
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 4.4e-117 424.9 249 80.3
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 6.4e-116 421.0 253 83.4
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 6.4e-116 421.0 252 79.8
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 9.2e-115 417.2 253 82.2
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.2e-114 416.8 249 79.5
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 7.8e-114 414.1 223 87.4
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.0e-113 412.1 250 82.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.9e-112 409.5 223 86.5
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 5.3e-110 401.4 231 83.1
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 5.3e-110 401.4 231 83.1
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 3.2e-107 392.1 225 83.1
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 5.4e-107 391.3 248 76.6
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.2e-106 390.2 248 77.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 4.6e-106 388.3 254 75.6
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.3e-105 386.7 252 77.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 3.9e-105 385.2 250 78.0
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 8.7e-105 384.0 450 50.0
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 4.8e-103 378.3 249 72.3
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.1e-102 377.1 248 71.8
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.0e-101 372.9 252 75.8
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 2.6e-101 372.5 208 85.1
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 9.9e-101 370.5 249 70.7
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.1e-99 367.1 280 69.6
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.4e-99 366.7 248 77.4
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 6.0e-98 361.3 211 82.5
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.0e-97 359.0 254 74.0
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.6e-96 354.8 240 75.4
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 7.6e-93 344.4 248 66.9
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.3e-92 343.6 208 79.3
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 1.7e-92 343.2 235 70.2
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.7e-92 343.2 249 68.7
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 3.8e-92 342.0 191 86.4
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.1e-91 340.5 248 71.0
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 2.7e-90 335.9 196 81.1
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 1.8e-89 333.2 250 69.2
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 4.8e-87 325.1 268 65.7
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.2e-85 320.5 248 62.9
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 4.5e-85 318.5 338 57.4
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.9e-84 315.8 279 62.4
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 2.7e-82 309.3 203 78.8
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 5.7e-80 301.6 249 65.1
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.4e-78 297.0 210 72.4
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 5.5e-75 285.0 157 86.0
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 6.1e-74 281.6 207 69.6
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 5.1e-73 278.5 168 82.7
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.1e-72 277.3 248 53.6
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 5.0e-68 261.9 284 54.2
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.1e-67 260.8 170 74.7
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 9.4e-67 257.7 228 52.2
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.0e-65 252.7 144 87.5
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 4.4e-64 248.8 230 53.0
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 1.2e-58 230.7 206 59.2
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.6e-58 230.3 173 68.8
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.6e-58 229.2 145 71.7
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.1e-46 189.5 112 79.5
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 2.0e-45 186.8 114 78.1
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.1e-43 181.0 130 75.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.5e-40 168.3 91 82.4
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 3.3e-35 152.9 249 42.6
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.6e-34 150.6 92 73.9
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 4.7e-34 149.1 174 48.9
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-30 137.1 102 69.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.1e-17 94.7 51 82.4


User provided reference genes

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