Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.6e-129 464.5 231 100.0
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.1e-73 279.6 204 68.1
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 4.4e-71 271.9 205 66.3
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.5e-58 229.6 199 58.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.5e-55 220.3 208 56.2
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.7e-54 216.9 198 58.1
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 4.1e-53 212.2 206 55.3
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 4.6e-52 208.8 200 55.5
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.3e-51 207.2 201 56.2
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 8.6e-51 204.5 199 56.3
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 5.6e-50 201.8 172 64.5
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 2.6e-47 193.0 202 53.0
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.4e-47 192.6 199 52.8
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.9e-46 188.7 202 52.5
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.6e-44 183.7 202 51.5
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 2.8e-41 172.9 203 48.3
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.1e-40 171.0 217 46.5
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 6.9e-40 168.3 210 49.0
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 6.9e-40 168.3 189 53.4
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 6.9e-40 168.3 218 46.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 9.0e-40 167.9 213 46.0
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.2e-39 167.5 196 50.0
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 2.0e-39 166.8 213 45.1
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.6e-39 166.4 209 45.9
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.6e-39 166.4 201 47.8
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 9.9e-39 164.5 211 45.5
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 9.9e-39 164.5 211 45.5
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 3.8e-38 162.5 212 47.6
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.9e-37 160.2 199 47.2
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.9e-37 160.2 247 41.7
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.4e-37 159.8 190 44.7
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.2e-37 159.1 199 45.7
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 4.2e-37 159.1 191 46.6
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 4.2e-37 159.1 203 45.3
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 2.7e-36 156.4 211 42.2
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 3.5e-36 156.0 190 48.9
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 6.0e-36 155.2 199 46.7
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.7e-35 153.7 214 44.9
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 6.6e-35 151.8 138 58.0
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.3e-33 147.5 207 44.0
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 4.8e-33 145.6 238 39.9
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 6.2e-33 145.2 200 44.5
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 2.6e-31 139.8 194 45.4
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 3.4e-31 139.4 170 51.2
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 5.8e-31 138.7 157 46.5
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.3e-30 137.5 202 42.1
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.2e-30 136.7 202 44.1
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 2.9e-30 136.3 207 41.5
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 1.2e-28 131.0 182 44.5
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 6.7e-27 125.2 213 41.3
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 1.5e-26 124.0 172 45.9
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.6e-25 120.6 207 38.2
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 4.8e-25 119.0 201 38.8
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 4.8e-25 119.0 177 41.2
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 4.8e-25 119.0 196 41.3
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 3.1e-24 116.3 168 46.4
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 4.0e-24 115.9 217 38.2
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 9.0e-24 114.8 199 38.2
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.6e-23 113.2 207 35.7
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.7e-22 110.5 197 36.0
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 2.5e-21 106.7 188 37.2
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 5.5e-21 105.5 199 37.7
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.2e-20 104.4 192 35.9
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.6e-20 104.0 198 37.4
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 2.1e-20 103.6 128 46.1
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 4.6e-20 102.4 195 33.8
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 6.0e-20 102.1 141 44.7
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 2.3e-19 100.1 202 33.7
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 3.0e-19 99.8 172 41.3
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.9e-19 99.4 200 38.5
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 5.1e-19 99.0 202 35.1
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 6.7e-19 98.6 128 43.0
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 1.5e-18 97.4 165 37.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.9e-18 97.1 178 37.6
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.5e-18 96.7 201 38.8
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.5e-18 96.7 197 39.1
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 2.5e-18 96.7 170 40.6
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 7.4e-18 95.1 199 39.2
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 2.1e-17 93.6 165 37.6
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.7e-17 92.8 201 34.3
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.8e-17 92.4 185 35.1
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.8e-17 92.4 185 35.1
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 6.2e-17 92.0 170 40.0
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.4e-16 90.9 142 39.4
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.8e-16 90.5 174 36.8
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 3.1e-16 89.7 185 35.7
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.9e-16 88.6 205 35.6
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 6.9e-16 88.6 206 35.9
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.2e-15 87.8 161 37.3
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.0e-15 87.0 107 43.0
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 3.4e-15 86.3 205 35.1
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.5e-15 85.9 135 40.0
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 4.5e-15 85.9 167 38.3
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 5.8e-15 85.5 183 33.9
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 7.6e-15 85.1 103 46.6
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 2.2e-14 83.6 193 32.6
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.2e-14 83.6 88 47.7
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 2.2e-14 83.6 92 47.8
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 3.8e-14 82.8 166 39.2
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.4e-13 80.9 131 38.9
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.5e-13 80.1 132 38.6
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 4.2e-13 79.3 105 43.8
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.2e-12 77.8 108 40.7
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.2e-12 77.8 205 32.2
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.2e-12 77.8 214 32.7
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 1.2e-12 77.8 91 45.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 2.1e-12 77.0 152 34.9
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 4.6e-12 75.9 119 36.1
Cfa018567 Carpinus fangiana HOM05D000187 ORTHO05D000926 1.8e-11 73.9 87 48.3
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 3.9e-11 72.8 199 30.2
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 6.7e-11 72.0 189 30.7
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 6.7e-11 72.0 172 33.7
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 8.7e-11 71.6 208 30.3
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.9e-10 70.5 183 30.1
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 2.5e-10 70.1 178 31.5
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 4.3e-10 69.3 177 29.9
ECA232G3854 Erigeron canadensis HOM05D041600 ORTHO05D045232 5.7e-10 68.9 130 38.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 9.7e-10 68.2 118 33.9
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.3e-09 67.8 103 34.0
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 2.2e-09 67.0 178 29.8
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 2.2e-09 67.0 178 29.8
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 4.8e-09 65.9 148 37.8
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 8.2e-09 65.1 106 40.6
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.1e-08 64.7 179 31.3
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.4e-08 64.3 170 35.3
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 2.4e-08 63.5 180 27.8
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 1.2e-07 61.2 166 26.5
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.0e-07 60.5 78 38.5
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 2.2e-06 57.0 33 72.7
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 3.8e-06 56.2 134 31.3
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 5.0e-06 55.8 130 36.9


User provided reference genes

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