Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028952 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.7e-86 320.9 158 100.0
Dinv32885 Davidia involucrata HOM05D000179 ORTHO05D000107 4.7e-40 168.3 179 57.5
Dinv22503 Davidia involucrata HOM05D000179 ORTHO05D000107 4.4e-38 161.8 163 60.1
CSS0000745 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.8e-37 159.1 183 55.2
Ciclev10019959m.g Citrus clementina HOM05D000179 ORTHO05D000107 4.9e-37 158.3 188 48.9
Nn1g02458 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.1e-36 155.6 182 51.6
Actinidia24923 Actinidia chinensis HOM05D000179 ORTHO05D000107 5.9e-35 151.4 157 59.2
TAR636G0240 Trochodendron aralioides HOM05D000179 ORTHO05D000107 9.5e-33 144.1 181 48.6
GSVIVG01003119001 Vitis vinifera HOM05D000179 ORTHO05D000107 8.9e-31 137.5 181 49.7
TAR365G0388 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.6e-30 136.0 185 48.1
vmacro14888 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.3e-29 133.7 173 50.9
Hma1.2p1_0172F.1_g076010 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 1.7e-29 133.3 162 51.9
Duzib211G0150 Durio zibethinus HOM05D000179 ORTHO05D000107 6.4e-29 131.3 168 50.6
Cc01_g19010 Coffea canephora HOM05D000179 ORTHO05D000107 1.4e-28 130.2 180 48.9
TAR633G1320 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.8e-28 129.8 169 50.9
Duzib133G0638 Durio zibethinus HOM05D000179 ORTHO05D000107 9.2e-28 127.5 162 48.1
Duzib138G1256 Durio zibethinus HOM05D000179 ORTHO05D000107 3.5e-27 125.6 172 47.7
Oeu014739.1 Olea europaea HOM05D000179 ORTHO05D000107 3.5e-27 125.6 171 48.0
Potri.005G215100 Populus trichocarpa HOM05D000179 ORTHO05D000107 7.8e-27 124.4 182 45.6
MD03G1258200 Malus domestica HOM05D000179 ORTHO05D000107 1.0e-26 124.0 181 50.3
Actinidia19961 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.3e-26 123.6 131 58.8
Gorai.008G002200 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.3e-26 122.9 163 49.1
MSTRG.17462 Avicennia marina HOM05D000179 ORTHO05D000107 3.0e-26 122.5 137 53.3
CiPaw.08G109700 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.0e-26 122.5 203 43.8
Gohir.D11G130800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.0e-26 122.5 166 47.0
Gorai.007G139800 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.0e-26 122.5 166 47.0
Gohir.D12G002500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.1e-25 120.6 163 48.5
Rhsim01G0272100 Rhododendron simsii HOM05D000179 ORTHO05D000064 1.5e-25 120.2 137 58.4
Thecc.01G271700 Theobroma cacao HOM05D000179 ORTHO05D000107 1.5e-25 120.2 168 46.4
Atru.chr5.1520 Acer truncatum HOM05D000179 ORTHO05D000107 5.6e-25 118.2 166 45.8
Gohir.A12G002800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.5e-25 117.5 164 48.2
Lj1A55G20 Lonicera japonica HOM05D000179 ORTHO05D000107 9.5e-25 117.5 166 46.4
Potri.002G048000 Populus trichocarpa HOM05D000179 ORTHO05D000107 9.5e-25 117.5 184 46.2
Cfa006201 Carpinus fangiana HOM05D000179 ORTHO05D000107 2.1e-24 116.3 161 49.7
RcHm_v2.0_Chr6g0289921 Rosa chinensis HOM05D000179 ORTHO05D000107 2.1e-24 116.3 168 46.4
Prupe.8G234800 Prunus persica HOM05D000179 ORTHO05D000107 3.6e-24 115.5 183 46.4
Gohir.A11G125500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.2e-24 114.8 166 45.8
COL.COLO4_09188 Corchorus olitorius HOM05D000179 ORTHO05D000107 2.3e-23 112.8 89 59.6
Manes.05G081800 Manihot esculenta HOM05D000179 ORTHO05D000107 3.1e-23 112.5 170 44.1
FvH4_2g22950 Fragaria vesca HOM05D000179 ORTHO05D000107 4.0e-23 112.1 169 45.0
FAN24G3243 Fragaria x ananassa HOM05D000179 ORTHO05D000107 6.8e-23 111.3 169 44.4
Sabra05G0164400 Salix brachista HOM05D000179 ORTHO05D000107 6.8e-23 111.3 181 43.1
FAN15G1122 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.2e-22 110.5 169 44.4
Lsat_1_v5_gn_5_185501 Lactuca sativa HOM05D000179 ORTHO05D000107 1.2e-22 110.5 146 48.6
Manes.01G204100 Manihot esculenta HOM05D000179 ORTHO05D000107 1.5e-22 110.2 182 43.4
FAN20G1262 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.0e-22 109.8 167 44.3
Sabra02G0039200 Salix brachista HOM05D000179 ORTHO05D000107 5.8e-22 108.2 185 42.7
Oeu025765.1 Olea europaea HOM05D000179 ORTHO05D000107 7.5e-22 107.8 145 46.9
CiPaw.07G086900 Carya illinoinensis HOM05D000179 ORTHO05D000107 9.8e-22 107.5 195 44.1
CANSAT25G0389 Cannabis sativa HOM05D000179 ORTHO05D000107 3.7e-21 105.5 169 42.0
MD11G1278800 Malus domestica HOM05D000179 ORTHO05D000107 6.4e-21 104.8 167 47.3
VMungo1383G2029 Vigna mungo HOM05D000179 ORTHO05D000107 6.4e-21 104.8 182 42.3
MELO3C015806.2 Cucumis melo HOM05D000179 ORTHO05D000107 1.1e-20 104.0 172 40.7
CsaV3_7G027880 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.4e-20 103.6 172 40.1
FAN27G2274 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.4e-20 103.6 168 43.5
Phvul.001G154800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.4e-20 103.6 186 42.5
Gohir.A08G064000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.4e-20 102.8 158 43.0
Gorai.004G076800 Gossypium raimondii HOM05D000179 ORTHO05D000107 5.4e-20 101.7 158 43.7
Gohir.D08G072500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.0e-20 101.3 158 43.7
HanXRQChr01g0005621 Helianthus annuus HOM05D000179 ORTHO05D000107 7.0e-20 101.3 170 41.2
Glyma.19G159600 Glycine max HOM05D000179 ORTHO05D000107 1.2e-19 100.5 182 39.6
Nn6g34168 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.2e-19 100.5 176 39.8
Oeu028463.1 Olea europaea HOM05D000179 ORTHO05D000107 2.0e-19 99.8 156 46.2
DCAR_012507 Daucus carota HOM05D000179 ORTHO05D000107 1.7e-18 96.7 161 42.9
ClCG09G007400 Citrullus lanatus HOM05D000179 ORTHO05D000107 3.0e-18 95.9 200 35.0
MSTRG.12550 Avicennia marina HOM05D000179 ORTHO05D000107 5.0e-18 95.1 151 45.0
Cpa.g.sc52.117 Carica papaya HOM05D000179 ORTHO05D000107 5.0e-18 95.1 161 41.6
DCAR_002702 Daucus carota HOM05D000179 ORTHO05D000107 8.6e-18 94.4 182 40.7
TWI12G1078 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.5e-17 93.6 177 41.2
Peaxi162Scf00259g00513 Petunia axillaris HOM05D000179 ORTHO05D000107 3.3e-17 92.4 192 41.7
Aqoxy2G03463 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 7.3e-17 91.3 191 37.7
arahy.Tifrunner.gnm1.ann1.KA762Q Arachis hypogaea HOM05D000179 ORTHO05D000107 1.2e-16 90.5 184 37.5
Phvul.007G174900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.6e-16 90.1 185 37.8
Actinidia21142 Actinidia chinensis HOM05D000179 ORTHO05D000107 8.1e-16 87.8 108 53.7
Sabra02G0039100 Salix brachista HOM05D000179 ORTHO05D000107 1.1e-15 87.4 91 52.7
arahy.Tifrunner.gnm1.ann1.9KUV83 Arachis hypogaea HOM05D000179 ORTHO05D000107 6.8e-15 84.7 186 36.6
Nitab4.5_0000459g0080 Nicotiana tabacum HOM05D000179 ORTHO05D000107 6.8e-15 84.7 191 40.3
Sed0017240 Sechium edule HOM05D000179 ORTHO05D000107 1.5e-14 83.6 194 35.1
MBI04_g27914_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 2.0e-14 83.2 162 37.7
Glyma.03G157432 Glycine max HOM05D000179 ORTHO05D000107 2.6e-14 82.8 175 37.1
Psat6g058520 Pisum sativum HOM05D000179 ORTHO05D000107 3.4e-14 82.4 176 39.2
VMungo0720G1299 Vigna mungo HOM05D000179 ORTHO05D000107 3.4e-14 82.4 161 39.1
Lj5g0021439 Lotus japonicus HOM05D000179 ORTHO05D000107 2.2e-13 79.7 173 37.6
Lalb_Chr06g0162791 Lupinus albus HOM05D000179 ORTHO05D000107 2.9e-13 79.3 195 34.9
Eucgr.B01471 Eucalyptus grandis HOM05D000179 ORTHO05D000107 8.3e-13 77.8 177 37.3
Lalb_Chr21g0306341 Lupinus albus HOM05D000179 ORTHO05D000107 2.4e-12 76.3 186 34.9
TPR.G34885 Trifolium pratense HOM05D000179 ORTHO05D000107 2.4e-12 76.3 167 37.1
Glyma.02G144400 Glycine max HOM05D000179 ORTHO05D000107 5.4e-12 75.1 174 36.2
Sed0000186 Sechium edule HOM05D000179 ORTHO05D000107 7.1e-12 74.7 158 34.8
Glyma.10G029700 Glycine max HOM05D000179 ORTHO05D000107 2.1e-11 73.2 179 34.6
Nitab4.5_0004115g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.7e-11 72.8 159 40.9
CAN.G433.5 Capsicum annuum HOM05D000179 ORTHO05D000107 6.0e-11 71.6 206 35.0
QL12p042256 Quercus lobata HOM05D000179 ORTHO05D000107 7.8e-11 71.2 108 42.6
PSO384G3854 Papaver somniferum HOM05D000179 ORTHO05D000107 5.1e-10 68.6 207 35.3
PSO339G5190 Papaver somniferum HOM05D000179 ORTHO05D000107 6.6e-10 68.2 211 35.1
TWI18G1044 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 6.6e-10 68.2 146 39.0
ECA248G0822 Erigeron canadensis HOM05D000179 ORTHO05D000107 2.5e-09 66.2 162 38.3
MBI04_g08702_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 7.3e-09 64.7 105 40.0
AT4G02670 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 1.2e-08 63.9 143 38.5
Aqoxy5G00399 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 2.8e-08 62.8 120 34.2
Solyc09g065670.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 4.7e-08 62.0 203 32.5
BcaB05g23653 Brassica carinata HOM05D000179 ORTHO05D000107 2.3e-07 59.7 180 31.7
A02p24910 Brassica napus HOM05D000179 ORTHO05D000107 2.3e-07 59.7 178 32.6
BraA02t07481Z Brassica rapa HOM05D000179 ORTHO05D000107 2.3e-07 59.7 178 32.6
Lj1g0012149 Lotus japonicus HOM05D000179 ORTHO05D000107 2.3e-07 59.7 189 31.2
BcaC03g16159 Brassica carinata HOM05D000179 ORTHO05D000107 4.0e-07 58.9 178 32.0
Sopen09g027420 Solanum pennellii HOM05D000179 ORTHO05D000107 4.0e-07 58.9 202 32.7
CARHR250970 Cardamine hirsuta HOM05D000179 ORTHO05D000107 1.5e-06 57.0 91 39.6
Sc05g0001290 Simmondsia chinensis HOM05D000179 ORTHO05D000107 1.5e-06 57.0 192 35.9
PGSC0003DMG400019342 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.5e-06 57.0 207 30.9
Lj2A1165G50 Lonicera japonica HOM05D000179 ORTHO05D000107 5.8e-06 55.1 121 38.8
EL10Ac5g10493 Beta vulgaris HOM05D000179 ORTHO05D000107 9.9e-06 54.3 151 35.1


User provided reference genes

Program Settings