Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.6e-96 355.1 208 100.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.6e-75 286.6 207 75.4
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.5e-75 285.4 207 74.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.5e-74 281.2 170 79.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.7e-72 275.0 207 71.5
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 6.1e-72 274.6 206 71.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.3e-71 272.7 206 70.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.3e-71 272.7 169 78.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.8e-71 271.2 163 84.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 8.8e-71 270.8 167 79.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.8e-71 270.8 168 79.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.2e-70 270.4 201 70.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.5e-70 267.7 168 76.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 9.8e-70 267.3 168 77.4
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.2e-69 266.2 206 67.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.8e-69 265.8 168 76.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 4.8e-69 265.0 169 78.1
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-68 263.5 168 78.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.1e-68 262.3 221 67.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.1e-68 261.9 170 76.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 5.4e-68 261.5 168 76.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.1e-68 260.8 168 74.4
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-67 260.4 167 75.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.6e-67 260.0 167 76.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.6e-67 260.0 169 72.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.5e-67 258.8 169 73.4
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.5e-67 258.5 170 74.1
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 7.7e-67 257.7 170 73.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.7e-66 256.5 169 74.6
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.7e-66 256.5 170 75.9
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.7e-66 256.5 167 75.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.3e-66 256.1 167 76.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 3.8e-66 255.4 199 65.3
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.0e-66 255.0 167 76.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 6.6e-66 254.6 169 76.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 8.6e-66 254.2 167 75.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.6e-66 254.2 167 72.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.5e-65 253.4 168 74.4
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.5e-65 253.4 167 74.9
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.9e-65 253.1 168 70.8
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.5e-65 252.7 165 73.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 2.5e-65 252.7 168 73.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 3.3e-65 252.3 166 71.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.3e-65 252.3 169 75.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.2e-65 251.9 167 76.0
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.2e-65 251.9 235 62.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.2e-65 251.1 168 72.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.2e-65 251.1 202 64.4
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 7.2e-65 251.1 167 73.7
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 9.5e-65 250.8 169 75.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.1e-64 249.6 168 73.8
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.1e-64 249.6 197 61.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.8e-64 249.2 170 71.2
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.8e-64 249.2 168 75.0
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 4.7e-64 248.4 167 74.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 4.7e-64 248.4 192 67.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.0e-64 247.7 167 73.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.0e-63 247.3 169 73.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.0e-63 247.3 167 70.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.0e-63 247.3 150 78.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.4e-63 246.9 169 74.6
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.8e-63 246.5 167 71.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.8e-63 246.5 176 71.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.8e-63 246.5 176 71.6
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-63 246.5 167 73.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.3e-63 246.1 167 71.3
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.0e-63 245.7 165 70.9
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.0e-63 245.4 151 76.2
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 6.8e-63 244.6 169 74.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 6.8e-63 244.6 165 70.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 6.8e-63 244.6 203 64.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 8.9e-63 244.2 167 71.9
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.9e-63 244.2 165 72.7
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.5e-62 243.4 167 69.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.4e-62 242.3 165 69.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 3.4e-62 242.3 164 73.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 4.4e-62 241.9 170 71.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 4.4e-62 241.9 170 71.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.7e-62 241.5 167 68.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.7e-62 241.5 170 71.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.7e-62 241.5 170 71.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 7.5e-62 241.1 208 59.1
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 9.8e-62 240.7 167 71.9
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.3e-61 240.4 167 71.3
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-61 240.0 167 71.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 4.9e-61 238.4 165 72.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.3e-61 238.0 211 60.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.1e-60 237.3 167 68.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.4e-60 236.9 166 71.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.4e-60 236.9 170 72.4
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-60 236.9 164 72.6
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 168 69.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.4e-60 236.1 164 70.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.1e-60 235.3 161 72.7
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.4e-60 235.0 166 68.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 5.4e-60 235.0 151 76.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 7.0e-60 234.6 167 69.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.2e-59 233.8 167 68.9
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.2e-59 233.8 169 68.6
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.2e-59 233.8 169 69.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.0e-59 233.0 150 74.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.0e-59 233.0 150 75.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 3.5e-59 232.3 166 70.5
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 5.9e-59 231.5 164 69.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.3e-58 229.6 170 66.5
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-57 225.7 150 74.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-57 225.7 150 74.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.3e-57 225.3 174 60.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.3e-57 225.3 164 68.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 9.5e-57 224.2 166 69.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.8e-56 222.6 185 63.8
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.6e-56 222.2 167 65.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 6.1e-56 221.5 191 62.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.4e-55 220.3 169 68.0
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 4.0e-55 218.8 165 64.2
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 6.8e-55 218.0 169 66.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 8.9e-55 217.6 204 57.8
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.6e-54 216.1 150 69.3
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.8e-54 214.9 150 68.7
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.7e-51 206.1 142 67.6
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 8.6e-50 201.1 167 63.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.6e-49 198.4 160 65.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 4.7e-48 195.3 232 49.6
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 6.2e-48 194.9 150 62.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.1e-47 194.1 167 61.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.9e-45 185.3 164 55.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.4e-45 184.9 163 54.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.8e-43 177.9 123 89.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 3.9e-42 175.6 128 69.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.1e-41 174.1 163 54.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.4e-36 156.4 99 81.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-36 156.0 168 48.2
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.7e-34 150.2 103 70.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.0e-34 149.4 102 74.5
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.6e-34 148.3 171 47.4
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.1e-33 147.5 170 48.8
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-33 146.7 125 59.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 9.5e-33 144.4 87 75.9
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.8e-32 142.9 97 73.2
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.4e-31 140.6 83 77.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.2e-31 138.7 139 54.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-30 137.5 83 75.9
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.7e-27 126.3 110 60.9
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.9e-25 120.2 71 74.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.7e-24 115.5 137 48.9
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.0e-23 112.5 82 67.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 4.6e-19 99.0 72 66.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.3e-17 92.4 82 56.1
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.2e-14 84.3 135 34.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 4.9e-13 79.0 62 67.7
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.1e-12 77.8 76 56.6
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-09 67.0 96 41.7
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.8e-08 62.4 47 63.8
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 6.2e-08 62.0 39 71.8
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.2e-08 62.0 42 69.0
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.1e-07 59.7 39 71.8
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 3.1e-07 59.7 46 69.6
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 2.0e-06 57.0 46 67.4


User provided reference genes

Program Settings