Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 7.0e-28 126.7 71 100.0
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.0e-27 123.6 71 97.2
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.5e-25 119.0 71 95.8
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 3.1e-23 111.3 69 88.4
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 9.2e-20 99.8 70 80.0
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 3.0e-18 94.7 70 75.7
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 3.9e-18 94.4 69 75.4
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 5.1e-18 94.0 69 76.8
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 6.6e-18 93.6 70 77.1
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 8.6e-18 93.2 67 79.1
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 1.9e-17 92.0 70 77.1
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 1.9e-17 92.0 70 74.3
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 3.3e-17 91.3 67 74.6
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 4.3e-17 90.9 70 77.1
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 5.6e-17 90.5 68 80.9
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 5.6e-17 90.5 68 80.9
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 7.3e-17 90.1 67 74.6
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 9.5e-17 89.7 67 71.6
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.2e-16 89.4 69 75.4
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 2.1e-16 88.6 72 72.2
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 2.8e-16 88.2 69 76.8
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 3.6e-16 87.8 70 74.3
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 4.7e-16 87.4 70 77.1
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 4.7e-16 87.4 70 77.1
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 6.2e-16 87.0 69 78.3
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 2.3e-15 85.1 70 68.6
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 2.3e-15 85.1 69 68.1
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 2.3e-15 85.1 67 68.7
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 3.1e-15 84.7 70 70.0
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 4.0e-15 84.3 69 69.6
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 5.2e-15 84.0 65 73.8
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 5.2e-15 84.0 70 70.0
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 5.2e-15 84.0 68 69.1
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 6.8e-15 83.6 70 74.3
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 6.8e-15 83.6 69 66.7
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 8.9e-15 83.2 70 65.7
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 8.9e-15 83.2 70 71.4
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 1.5e-14 82.4 70 65.7
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 1.5e-14 82.4 69 75.4
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 2.0e-14 82.0 70 67.1
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 3.4e-14 81.3 70 68.6
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 4.4e-14 80.9 70 71.4
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 5.8e-14 80.5 70 74.3
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 7.5e-14 80.1 63 73.0
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 7.5e-14 80.1 69 68.1
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 9.9e-14 79.7 63 73.0
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 1.3e-13 79.3 70 68.6
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.3e-13 79.3 70 68.6
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 1.3e-13 79.3 70 68.6
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 1.3e-13 79.3 71 71.8
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 1.3e-13 79.3 70 71.4
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 1.7e-13 79.0 70 74.3
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 1.7e-13 79.0 68 69.1
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 2.2e-13 78.6 68 69.1
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 2.2e-13 78.6 68 69.1
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 2.2e-13 78.6 70 67.1
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 4.9e-13 77.4 70 64.3
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 4.9e-13 77.4 66 66.7
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 4.9e-13 77.4 68 69.1
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 4.9e-13 77.4 68 69.1
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 6.4e-13 77.0 68 67.6
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 66.2
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 64.3
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 64.3
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 64.3
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 64.3
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 64.3
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 66.2
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 66.2
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 66.2
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 66.2
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 1.9e-12 75.5 68 66.2
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 1.9e-12 75.5 71 67.6
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 1.9e-12 75.5 67 68.7
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 2.4e-12 75.1 70 65.7
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 3.2e-12 74.7 68 64.7
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 4.1e-12 74.3 68 64.7
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 9.2e-12 73.2 74 71.6
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 1.2e-11 72.8 68 63.2
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 3.9e-10 67.8 41 82.9
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 1.6e-08 62.4 69 55.1
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 3.6e-08 61.2 62 59.7
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 6.8e-07 57.0 71 49.3
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 8.9e-07 56.6 71 50.7
Potri.016G018650 Populus trichocarpa HOM05D007805 ORTHO05D009877 8.9e-07 56.6 70 55.7


User provided reference genes

Program Settings