Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.3e-96 356.3 168 100.0
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.4e-95 352.1 168 98.2
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.2e-94 349.7 168 98.8
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.0e-93 346.7 168 97.6
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.2e-88 328.9 167 93.4
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.7e-75 285.0 167 83.8
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.7e-72 276.2 168 82.1
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 7.6e-65 250.8 167 76.6
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.0e-61 240.4 167 73.1
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.8e-61 239.6 167 73.7
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 2.3e-29 132.9 93 67.7
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 4.8e-27 125.2 97 60.8
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 2.9e-24 115.9 112 51.8
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 8.5e-24 114.4 109 47.7
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 4.2e-23 112.1 81 61.7
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 9.4e-23 110.9 94 60.6
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 2.7e-22 109.4 93 53.8
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 4.7e-22 108.6 97 50.5
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 8.0e-22 107.8 100 51.0
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 1.4e-21 107.1 112 48.2
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 1.8e-21 106.7 100 51.0
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 2.3e-21 106.3 93 52.7
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 5.2e-21 105.1 109 45.0
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 6.8e-21 104.8 85 52.9
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 8.8e-21 104.4 93 51.6
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 7.5e-20 101.3 101 49.5
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 1.3e-19 100.5 100 45.0
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 1.7e-19 100.1 93 48.4
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 1.7e-19 100.1 81 50.6
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 2.2e-19 99.8 93 49.5
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 2.2e-19 99.8 93 47.3
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 2.2e-19 99.8 78 55.1
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 2.2e-19 99.8 100 47.0
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 2.2e-19 99.8 97 47.4
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.8e-19 99.4 78 55.1
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 2.8e-19 99.4 140 38.6
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 2.8e-19 99.4 85 50.6
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 3.7e-19 99.0 81 51.9
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 3.7e-19 99.0 81 56.8
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 4.9e-19 98.6 129 42.6
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 4.9e-19 98.6 93 49.5
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 6.3e-19 98.2 93 46.2
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 6.3e-19 98.2 120 43.3
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 6.3e-19 98.2 88 46.6
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 8.3e-19 97.8 81 50.6
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 1.1e-18 97.4 111 43.2
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.1e-18 97.4 117 42.7
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.1e-18 97.4 117 42.7
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 1.1e-18 97.4 97 44.3
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.1e-18 97.4 81 51.9
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 1.1e-18 97.4 116 42.2
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 1.4e-18 97.1 93 47.3
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.8e-18 96.7 93 45.2
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 1.8e-18 96.7 93 45.2
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 1.8e-18 96.7 74 52.7
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 2.4e-18 96.3 122 45.9
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 2.4e-18 96.3 93 50.5
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 3.1e-18 95.9 76 56.6
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 3.1e-18 95.9 100 45.0
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 3.1e-18 95.9 77 53.2
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 4.1e-18 95.5 140 36.4
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 4.1e-18 95.5 112 42.0
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 5.4e-18 95.1 100 47.0
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 5.4e-18 95.1 77 53.2
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 7.0e-18 94.7 78 52.6
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 7.0e-18 94.7 81 49.4
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 7.0e-18 94.7 79 50.6
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 7.0e-18 94.7 118 42.4
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 7.0e-18 94.7 93 43.0
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.2e-18 94.4 82 51.2
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.2e-18 94.4 82 51.2
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 9.2e-18 94.4 82 51.2
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 9.2e-18 94.4 88 45.5
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 1.2e-17 94.0 79 51.9
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 1.6e-17 93.6 93 45.2
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 2.0e-17 93.2 85 50.6
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.0e-17 93.2 82 51.2
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 2.0e-17 93.2 74 52.7
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 2.0e-17 93.2 80 50.0
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 2.7e-17 92.8 93 44.1
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 4.5e-17 92.0 93 45.2
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 4.5e-17 92.0 93 45.2
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 4.5e-17 92.0 93 45.2
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 4.5e-17 92.0 90 50.0
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 4.5e-17 92.0 119 42.0
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 4.5e-17 92.0 118 41.5
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 4.5e-17 92.0 118 41.5
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 4.5e-17 92.0 81 46.9
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 4.5e-17 92.0 93 49.5
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 5.9e-17 91.7 81 49.4
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 7.7e-17 91.3 85 48.2
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 1.3e-16 90.5 93 44.1
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 1.3e-16 90.5 84 45.2
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.3e-16 90.5 93 48.4
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 1.7e-16 90.1 111 40.5
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 2.3e-16 89.7 77 49.4
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 2.9e-16 89.4 94 43.6
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.9e-16 89.4 100 46.0
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 3.8e-16 89.0 93 44.1
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 8.6e-16 87.8 130 40.8
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 1.1e-15 87.4 93 45.2
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 1.1e-15 87.4 98 45.9
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 1.1e-15 87.4 93 44.1
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.1e-15 87.4 94 46.8
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.5e-15 87.0 122 39.3
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 1.5e-15 87.0 80 48.8
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 3.3e-15 85.9 80 45.0
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 4.3e-15 85.5 93 44.1
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 4.3e-15 85.5 93 44.1
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 4.3e-15 85.5 80 48.8
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 5.6e-15 85.1 85 47.1
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 5.6e-15 85.1 103 41.7
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 9.5e-15 84.3 80 42.5
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 9.5e-15 84.3 71 50.7
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 9.5e-15 84.3 94 38.3
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 1.2e-14 84.0 93 46.2
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 2.1e-14 83.2 91 41.8
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 2.8e-14 82.8 73 52.1
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 2.8e-14 82.8 93 41.9
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.6e-14 82.4 115 40.0
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 3.6e-14 82.4 93 45.2
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 4.7e-14 82.0 96 44.8
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 6.1e-14 81.6 67 47.8
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 1.0e-13 80.9 96 38.5
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 1.4e-13 80.5 87 37.9
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.8e-13 80.1 85 47.1
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 1.8e-13 80.1 73 49.3
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 2.3e-13 79.7 70 45.7
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 2.3e-13 79.7 93 44.1
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 3.0e-13 79.3 73 49.3
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 4.0e-13 79.0 78 50.0
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 4.0e-13 79.0 117 35.9
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 5.2e-13 78.6 116 37.9
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 5.2e-13 78.6 93 40.9
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 5.2e-13 78.6 90 42.2
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 8.9e-13 77.8 74 48.6
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 1.2e-12 77.4 95 43.2
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 1.2e-12 77.4 93 40.9
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 1.5e-12 77.0 101 40.6
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 2.0e-12 76.6 67 50.7
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 2.0e-12 76.6 80 42.5
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.6e-12 76.3 152 32.2
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 3.4e-12 75.9 99 40.4
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 3.4e-12 75.9 80 40.0
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 9.8e-12 74.3 93 39.8
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 9.8e-12 74.3 67 44.8
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 9.8e-12 74.3 71 43.7
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 1.7e-11 73.6 72 48.6
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 3.7e-11 72.4 97 38.1
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 3.7e-11 72.4 82 43.9
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 4.9e-11 72.0 103 37.9
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 4.9e-11 72.0 105 39.0
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 6.4e-11 71.6 121 37.2
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 8.3e-11 71.2 84 46.4
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 8.3e-11 71.2 71 40.8
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 1.1e-10 70.9 92 35.9
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 1.8e-10 70.1 95 40.0
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 1.8e-10 70.1 71 40.8
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 2.4e-10 69.7 99 37.4
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 4.1e-10 68.9 83 41.0
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 5.4e-10 68.6 93 38.7
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 1.2e-09 67.4 58 50.0
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 1.6e-09 67.0 95 41.1
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 5.9e-09 65.1 94 33.0
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 5.9e-09 65.1 65 38.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 7.8e-09 64.7 84 38.1
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 1.3e-08 63.9 80 37.5
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 1.7e-08 63.5 81 38.3
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 1.7e-08 63.5 81 38.3
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 1.7e-08 63.5 81 38.3
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 3.0e-08 62.8 92 40.2
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 3.9e-08 62.4 111 32.4
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 3.9e-08 62.4 80 36.2
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 3.9e-08 62.4 80 36.2
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 3.9e-08 62.4 111 32.4
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 1.1e-07 60.8 126 31.0
A08p29180 Brassica napus HOM05D000649 ORTHO05D000513 1.2e-06 57.4 82 37.8
Zm00001eb388030 Zea mays HOM05D000649 ORTHO05D000513 1.2e-06 57.4 96 33.3
Haze_12233 Corylus avellana HOM05D000740 ORTHO05D003236 1.6e-06 57.0 44 68.2
Nitab4.5_0007250g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 2.1e-06 56.6 67 41.8
VMungo1215G0879 Vigna mungo HOM05D000740 ORTHO05D003236 4.7e-06 55.5 33 81.8
EL10Ac1g01869 Beta vulgaris HOM05D000649 ORTHO05D000513 6.2e-06 55.1 95 36.8
Os06g0622900 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 6.2e-06 55.1 101 33.7
Dinv15246 Davidia involucrata HOM05D000740 ORTHO05D003236 8.0e-06 54.7 38 73.7
PGR119G0463 Punica granatum HOM05D000649 ORTHO05D000513 8.0e-06 54.7 70 40.0
PGSC0003DMG401013639 Solanum tuberosum HOM05D000649 ORTHO05D000513 8.0e-06 54.7 67 40.3


User provided reference genes

Program Settings