Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.5e-239 832.4 417 100.0
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 9.0e-200 700.3 408 89.0
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 6.7e-195 684.1 397 89.2
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 5.1e-187 657.9 408 82.1
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 5.1e-187 657.9 408 82.4
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 2.0e-186 656.0 408 82.8
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.4e-184 649.0 408 80.9
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 4.1e-184 648.3 419 80.0
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 5.3e-184 647.9 408 84.1
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 7.0e-184 647.5 408 80.9
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 1.7e-182 642.9 408 80.1
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 2.2e-182 642.5 408 80.1
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 3.8e-182 641.7 408 79.4
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 6.5e-182 641.0 408 79.9
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 1.5e-181 639.8 408 79.7
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.2e-180 636.7 408 79.7
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 2.1e-180 636.0 408 78.4
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 1.3e-177 626.7 408 78.2
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 1.3e-177 626.7 408 78.9
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 1.7e-177 626.3 408 78.4
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 2.2e-177 625.9 408 77.0
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.2e-177 625.9 408 77.0
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 2.2e-177 625.9 408 79.4
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 2.8e-177 625.5 408 78.2
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.1e-176 622.1 408 76.5
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 5.9e-175 617.8 408 76.5
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 1.7e-174 616.3 408 77.0
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 7.2e-173 610.9 408 77.0
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 2.7e-172 609.0 408 77.2
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 2.7e-172 609.0 408 76.2
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 4.7e-172 608.2 408 76.2
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 6.1e-172 607.8 408 75.0
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 8.0e-172 607.4 408 74.8
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 1.0e-171 607.1 408 76.7
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 1.4e-171 606.7 408 75.7
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 1.4e-171 606.7 408 75.7
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 1.8e-171 606.3 408 76.0
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 3.0e-171 605.5 408 76.2
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 3.0e-171 605.5 408 75.7
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 5.2e-171 604.7 408 75.2
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 8.8e-171 604.0 408 76.2
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 8.8e-171 604.0 408 75.7
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 1.5e-170 603.2 408 76.2
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.5e-170 603.2 408 75.7
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 2.6e-170 602.4 408 76.2
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 7.5e-170 600.9 408 74.5
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 7.5e-170 600.9 408 76.0
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 1.3e-169 600.1 408 75.2
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 2.8e-169 599.0 408 75.7
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 2.8e-169 599.0 408 75.0
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 4.8e-169 598.2 409 74.3
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 6.3e-169 597.8 408 74.0
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 1.1e-168 597.0 408 75.5
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 1.8e-168 596.3 409 74.1
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 3.1e-168 595.5 408 75.0
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 9.1e-168 594.0 408 74.5
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 9.1e-168 594.0 408 74.0
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 4.5e-167 591.7 408 74.8
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.3e-166 590.1 408 73.0
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.7e-166 589.7 408 73.0
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.7e-166 589.7 408 73.8
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 5.0e-166 588.2 408 72.3
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 5.0e-166 588.2 408 72.1
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.1e-165 587.0 408 73.0
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 1.5e-165 586.6 408 73.0
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.5e-165 586.6 408 72.8
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-165 586.3 408 72.8
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 2.5e-165 585.9 408 72.8
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 1.2e-164 583.6 408 73.0
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.1e-164 582.8 408 73.5
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 3.6e-164 582.0 408 72.5
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 3.6e-164 582.0 408 72.1
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 2.8e-161 572.4 409 70.2
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 3.7e-161 572.0 408 72.3
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 1.8e-160 569.7 408 70.3
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 2.4e-160 569.3 408 70.1
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 2.4e-160 569.3 408 70.1
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 2.4e-160 569.3 409 71.4
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 3.1e-160 568.9 408 70.6
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 9.2e-160 567.4 401 71.6
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 9.2e-160 567.4 408 70.6
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 1.2e-159 567.0 381 76.4
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 2.7e-159 565.8 408 69.6
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.7e-159 565.8 408 70.3
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 3.5e-159 565.5 408 69.6
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 3.5e-159 565.5 408 69.6
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 3.5e-159 565.5 408 69.9
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 1.0e-158 563.9 408 69.4
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 1.3e-158 563.5 408 69.4
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 4.3e-157 558.5 408 69.9
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 2.8e-156 555.8 408 71.8
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 8.0e-156 554.3 408 68.6
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 8.0e-156 554.3 429 68.5
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 4.9e-153 545.0 408 66.9
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 4.9e-153 545.0 408 67.2
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 2.7e-151 539.3 408 68.9
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 3.3e-149 532.3 408 68.4
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 3.6e-148 528.9 408 68.1
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.2e-146 523.9 408 67.2
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.2e-146 523.9 408 66.9
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.5e-146 523.5 408 66.9
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 3.4e-146 522.3 408 66.7
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 1.5e-141 506.9 408 66.7
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 5.8e-138 495.0 411 61.3
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.1e-135 486.5 408 62.3
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.0e-134 484.2 410 59.3
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 1.3e-134 483.8 415 58.8
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 5.1e-134 481.9 408 63.0
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.7e-132 475.3 408 61.3
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 1.8e-131 473.4 417 60.2
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 4.0e-123 445.7 408 57.8
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 2.0e-122 443.4 408 58.1
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.0e-122 443.4 408 58.8
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 6.0e-119 431.8 411 57.4
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 5.1e-118 428.7 409 57.2
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.3e-116 424.1 408 56.6
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 4.9e-113 412.1 419 50.8
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 3.7e-108 396.0 335 65.4
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 3.1e-107 392.9 408 52.5
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 1.3e-102 377.5 297 66.3
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.5e-98 364.0 389 52.4
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.2e-89 333.6 293 61.4
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.2e-80 303.1 177 87.0
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 9.4e-80 301.6 417 43.2
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 3.3e-77 293.1 203 74.9
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 4.8e-76 289.3 279 59.5
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.5e-66 256.1 201 65.7
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.7e-65 254.2 197 67.0
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.6e-63 246.5 182 69.8
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 8.8e-62 241.9 427 33.7
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 2.3e-38 164.1 108 71.3
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 2.3e-38 164.1 108 71.3
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.0e-37 161.0 133 57.1
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 4.7e-31 139.8 127 55.1
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 6.0e-26 122.9 75 73.3
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.2e-22 109.8 68 75.0
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.5e-21 108.2 278 27.7
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.4e-21 107.1 66 75.8
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 2.9e-20 104.0 55 89.1
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 2.4e-19 100.9 103 55.3
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 5.8e-13 79.7 41 92.7
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 5.8e-13 79.7 58 65.5
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 7.6e-13 79.3 58 65.5
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 2.7e-10 70.9 51 64.7


User provided reference genes

Program Settings