Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1919.1 985 100.0
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1427.2 939 77.0
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1387.1 1007 72.6
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1384.8 1010 72.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1359.7 1006 70.9
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1357.0 930 73.4
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1357.0 1008 69.8
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1355.1 1016 69.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1355.1 1004 71.3
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1339.7 929 74.1
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1335.9 1009 71.1
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1332.4 1005 69.8
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1329.7 962 70.9
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1329.3 962 70.9
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1327.4 964 73.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1322.0 1018 69.2
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1314.7 1011 69.5
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1313.1 1023 67.4
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1310.8 1016 68.8
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1309.7 927 72.5
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1308.1 983 69.5
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1297.7 1024 67.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1296.2 1025 67.9
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1296.2 948 70.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1293.9 991 70.4
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1293.1 950 70.7
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1286.6 1008 69.1
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1267.3 1026 68.0
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1266.9 1024 66.6
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1258.8 1000 67.6
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1257.3 1022 67.1
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1245.7 1002 69.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1241.5 1021 66.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1234.6 1014 64.8
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1232.6 956 68.8
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1212.2 919 69.9
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1206.8 1022 65.1
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1201.4 977 66.4
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1182.2 1037 63.8
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1175.6 949 65.1
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1166.8 1040 61.7
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1166.0 1024 61.7
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1163.7 1024 61.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1160.2 1024 61.4
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1159.1 1024 61.5
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 0.0e+00 1152.9 965 65.0
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1149.8 1024 61.3
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 0.0e+00 1145.2 831 69.4
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1139.0 946 66.9
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1137.1 972 63.2
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1128.6 986 62.9
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1110.1 999 60.3
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1108.2 942 63.7
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1103.6 923 63.4
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1101.3 923 63.3
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1096.6 1021 61.1
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1093.2 845 66.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1092.8 1023 60.2
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.3e-311 1073.2 956 62.3
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.0e-310 1070.1 1014 59.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 5.1e-310 1067.8 973 60.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.4e-304 1049.7 948 61.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.7e-303 1045.4 1032 56.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 5.1e-302 1041.2 1018 56.2
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 4.3e-301 1038.1 1021 57.7
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 2.1e-300 1035.8 978 58.8
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 3.7e-300 1035.0 971 58.7
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.4e-299 1032.3 953 59.7
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.9e-297 1025.4 834 64.0
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 7.4e-293 1010.7 953 59.6
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 3.7e-292 1008.4 983 59.1
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.0e-290 1002.7 675 73.3
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 4.5e-290 1001.5 1039 55.0
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 6.3e-284 981.1 1020 55.6
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 4.1e-283 978.4 870 59.4
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.2e-276 956.1 1037 52.0
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 7.7e-274 947.6 850 58.6
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 2.9e-273 945.7 978 53.9
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 3.8e-273 945.3 1037 51.3
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.0e-270 937.2 985 53.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 8.8e-270 934.1 982 53.3
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.1e-269 933.7 1034 52.2
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.5e-266 921.8 775 61.7
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.2e-265 919.5 1026 51.3
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 2.2e-265 919.5 1026 51.3
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 8.5e-265 917.5 1036 51.2
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 8.5e-265 917.5 1033 50.9
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 8.5e-265 917.5 1036 51.2
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.1e-264 917.1 969 53.6
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.0e-262 910.6 862 55.9
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.7e-260 903.3 862 55.6
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 6.3e-260 901.4 806 56.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 3.1e-259 899.0 1037 50.4
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 4.5e-258 895.2 537 79.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.9e-258 894.8 534 78.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 8.5e-257 891.0 990 50.5
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 4.7e-255 885.2 951 53.7
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 8.0e-255 884.4 1032 49.6
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 7.2e-248 861.3 756 59.5
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 3.6e-247 859.0 862 53.9
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.2e-239 833.9 525 75.8
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.1e-227 794.3 972 48.8
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.7e-220 769.2 666 58.0
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.4e-205 719.5 639 58.8
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 5.7e-168 595.9 400 73.5
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.2e-155 553.1 462 56.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 8.0e-154 548.9 725 47.6
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 4.4e-128 463.4 503 60.0
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 6.3e-127 459.5 403 55.8
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 4.4e-104 383.6 406 59.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.4e-89 335.5 447 47.4
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.0e-80 305.1 311 50.8
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.5e-54 217.2 741 27.8
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.3e-49 200.7 273 46.9
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.1e-49 199.9 154 59.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.8e-47 194.5 443 30.9
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.4e-46 192.6 442 31.2
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.4e-46 192.6 442 31.2
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.9e-46 192.2 392 32.4
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.4e-46 189.9 183 54.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.2e-31 142.1 478 26.2
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-30 139.8 318 29.9
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 8.0e-29 133.7 392 28.8
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.6e-21 108.2 454 27.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.0e-20 106.7 449 26.7
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.7e-18 99.4 107 56.1
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.5e-14 86.3 60 73.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.3e-14 84.0 472 23.1
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 2.6e-11 75.5 63 71.4
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.7e-10 72.8 146 30.1
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.2e-10 72.4 346 22.5
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.0e-09 67.4 306 24.2
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 5.9e-08 64.3 152 28.9
SMO116G0125 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.3e-07 63.2 296 24.7
SMO239G0038 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 5.0e-07 61.2 378 20.1
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 6.6e-07 60.8 89 34.8
Dinv23220 Davidia involucrata HOM05D002537 ORTHO05D002751 3.3e-06 58.5 103 29.1
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 3.3e-06 58.5 156 30.8
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.3e-06 58.5 106 32.1
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 4.3e-06 58.2 154 31.2
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 4.3e-06 58.2 154 31.2
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 5.6e-06 57.8 221 26.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 7.3e-06 57.4 98 36.7
Peaxi162Scf00128g01777 Petunia axillaris HOM05D002537 ORTHO05D002751 9.5e-06 57.0 119 30.3


User provided reference genes

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