Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.3e-186 654.4 316 100.0
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-171 606.3 316 93.0
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.7e-161 572.8 319 88.1
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.1e-160 567.0 316 86.1
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 5.1e-155 551.2 318 83.3
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.6e-154 548.9 317 80.1
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 4.4e-154 548.1 315 82.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.2e-153 545.8 314 82.8
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.6e-151 538.9 317 81.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-151 538.9 317 82.0
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.7e-151 537.3 315 81.6
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.7e-150 536.2 315 79.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.7e-150 536.2 316 80.1
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.0e-150 534.6 316 80.4
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-149 533.5 317 81.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 7.2e-149 530.8 315 79.7
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.6e-148 529.6 315 81.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 8.0e-148 527.3 315 79.4
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.4e-147 526.6 315 80.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.3e-147 525.8 315 77.1
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.9e-147 525.0 316 77.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 6.7e-147 524.2 314 77.7
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.6e-146 522.3 316 77.8
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 3.3e-146 521.9 315 80.3
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 3.3e-146 521.9 316 77.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 7.4e-146 520.8 322 77.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.7e-146 520.4 316 78.8
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 9.7e-146 520.4 316 78.8
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.7e-145 519.6 319 78.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.2e-145 519.2 319 78.1
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.8e-145 518.8 322 77.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.8e-144 516.2 317 76.7
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 9.1e-144 513.8 315 77.1
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.6e-143 513.1 317 76.0
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 5.9e-143 511.1 315 75.6
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.9e-143 511.1 316 75.6
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.0e-142 510.4 314 76.8
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.7e-142 509.6 319 74.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.8e-142 508.4 316 77.5
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.0e-142 508.1 316 76.3
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.5e-142 507.7 319 74.9
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.9e-141 506.1 316 75.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.9e-141 506.1 315 75.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 3.2e-141 505.4 315 74.0
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 3.2e-141 505.4 307 80.1
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.2e-141 505.0 319 74.6
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 7.2e-141 504.2 318 77.4
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 9.4e-141 503.8 316 76.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.6e-140 503.1 318 75.8
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.1e-140 502.7 316 74.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.7e-140 502.3 303 79.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 6.1e-140 501.1 316 75.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.0e-139 500.4 369 67.5
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.0e-139 498.4 292 80.1
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 75.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.0e-139 498.4 314 75.5
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 6.8e-139 497.7 315 74.9
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 6.8e-139 497.7 315 74.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.7e-138 494.6 321 74.5
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 5.7e-138 494.6 315 74.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 7.5e-138 494.2 315 74.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.2e-137 492.7 316 73.1
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.2e-137 492.7 317 74.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.3e-137 490.7 315 73.3
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-136 490.3 315 76.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.1e-136 488.8 316 72.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 9.1e-136 487.3 315 72.7
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 9.1e-136 487.3 321 73.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.2e-135 486.9 315 71.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.6e-135 486.5 337 70.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 3.5e-135 485.3 314 71.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 3.5e-135 485.3 320 73.4
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 5.9e-135 484.6 316 73.1
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.0e-134 483.8 331 68.9
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.0e-134 483.8 315 72.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.3e-134 483.4 318 72.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.7e-134 483.0 315 71.4
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 8.5e-134 480.7 316 71.8
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.5e-133 479.2 367 64.3
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.2e-133 478.4 316 70.3
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 7.2e-133 477.6 319 73.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 7.2e-133 477.6 315 71.4
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 7.2e-133 477.6 315 71.7
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 7.2e-133 477.6 317 70.3
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 9.4e-133 477.2 315 71.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 9.4e-133 477.2 315 71.7
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 9.4e-133 477.2 318 70.1
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.2e-132 476.9 315 71.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.1e-132 476.1 315 71.1
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.1e-132 476.1 315 71.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.1e-132 476.1 315 70.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.7e-132 475.7 315 70.8
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 6.1e-132 474.6 316 69.9
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 8.0e-132 474.2 315 71.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 8.0e-132 474.2 316 69.9
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-131 473.8 315 70.8
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 71.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.8e-131 473.0 313 70.3
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.3e-131 472.6 315 70.8
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.0e-131 472.2 317 71.0
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 5.2e-131 471.5 315 70.8
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 5.2e-131 471.5 289 81.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 6.8e-131 471.1 315 70.2
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 9.8e-130 467.2 316 72.2
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-129 466.1 315 71.4
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-129 466.1 315 71.1
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.1e-128 461.8 316 69.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 7.0e-128 461.1 315 68.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.1e-128 460.7 316 72.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.2e-127 460.3 315 68.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.2e-127 460.3 320 70.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 4.5e-127 458.4 316 70.6
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.7e-126 456.4 266 80.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 7.2e-125 451.1 319 67.4
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-123 446.0 316 68.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 4.0e-123 445.3 334 63.8
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.5e-122 443.4 314 68.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.0e-122 443.0 317 68.1
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 7.5e-122 441.0 336 66.1
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 4.9e-121 438.3 324 66.7
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 4.9e-121 438.3 389 57.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.7e-119 432.6 314 64.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.0e-118 430.6 314 64.0
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.0e-118 430.6 404 56.2
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.6e-118 427.6 289 71.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.4e-114 415.2 319 64.6
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 6.0e-111 404.8 243 79.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.9e-110 402.1 314 61.5
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 7.3e-109 397.9 332 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.6e-108 396.7 316 60.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.8e-107 393.3 316 62.7
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.0e-107 392.1 279 68.5
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.0e-107 392.1 317 61.8
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.6e-106 389.4 321 59.8
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.7e-103 379.4 291 63.6
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.3e-102 376.3 321 59.8
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 6.4e-97 358.2 306 62.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.9e-96 356.7 225 75.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.9e-94 349.0 353 49.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-92 344.0 304 63.2
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.6e-85 318.5 182 83.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.2e-81 306.6 199 73.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.5e-77 293.9 185 76.8
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.0e-74 283.5 219 62.6
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-66 256.9 187 67.4
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.0e-66 256.9 144 82.6
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.9e-65 253.1 165 73.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.6e-63 245.7 151 79.5
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.3e-52 211.1 147 68.0
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.0e-50 203.8 140 65.7
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.4e-46 191.0 125 73.6
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.9e-39 165.2 112 71.4
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.7e-37 159.1 124 63.7
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.7e-36 157.5 96 74.0
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 7.2e-32 142.1 105 66.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-31 141.4 93 74.2
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.3e-30 137.1 75 85.3
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 9.7e-29 131.7 90 67.8
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.1e-27 126.7 69 81.2
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.6e-26 123.6 67 83.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 3.5e-26 123.2 118 56.8
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 6.5e-25 119.0 169 45.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 2.5e-24 117.1 75 69.3
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.7e-20 103.2 58 77.6
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.4e-19 100.5 72 66.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.8e-12 77.0 43 81.4
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.5e-10 70.1 55 60.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.5e-08 63.9 80 51.2
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.6e-07 61.2 56 53.6
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 6.8e-06 55.8 42 66.7


User provided reference genes

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