Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 4.9e-272 940.6 510 100.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.7e-261 905.6 510 96.3
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.1e-194 683.7 520 76.5
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 4.7e-174 615.1 515 68.0
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 8.6e-168 594.3 524 66.0
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.3e-160 570.5 520 67.1
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.1e-158 563.1 517 65.8
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.2e-156 557.4 517 64.4
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.3e-155 553.9 330 91.5
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 2.2e-147 526.6 518 59.3
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.4e-140 502.7 526 62.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 5.2e-133 478.8 526 56.1
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 8.4e-131 471.5 524 57.1
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.1e-130 471.1 517 57.4
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 3.9e-128 462.6 520 55.4
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 5.1e-128 462.2 523 57.7
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 2.0e-124 450.3 534 52.6
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.6e-124 449.9 513 56.7
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.9e-122 443.7 527 56.9
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 7.1e-122 441.8 522 55.7
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.6e-121 440.7 543 52.3
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 8.7e-120 434.9 518 54.1
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.5e-119 434.1 567 51.1
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.3e-118 431.0 557 53.0
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 8.1e-118 428.3 539 52.9
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 5.8e-116 422.2 528 53.4
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 7.6e-116 421.8 526 51.0
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-115 421.0 519 53.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 3.2e-114 416.4 545 50.5
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 4.6e-113 412.5 540 52.8
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 4.6e-113 412.5 560 50.5
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.7e-112 408.3 518 53.1
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-111 407.9 559 50.1
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.4e-111 405.2 520 51.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 3.1e-109 399.8 556 48.7
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 5.3e-109 399.1 575 47.8
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 9.0e-109 398.3 560 49.5
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.5e-108 396.0 514 51.8
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 2.9e-107 393.3 520 51.5
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 4.9e-107 392.5 545 50.5
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 4.2e-106 389.4 520 51.2
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 7.1e-106 388.7 520 50.0
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.1e-105 387.1 503 53.1
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 6.7e-104 382.1 389 59.9
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 8.7e-104 381.7 538 48.3
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.5e-103 380.9 562 48.8
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 1.5e-103 380.9 566 46.8
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 2.1e-102 377.1 524 50.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 6.2e-102 375.6 493 49.5
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.1e-101 374.8 474 50.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.8e-101 374.0 534 48.7
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.8e-101 374.0 515 49.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 4.5e-100 369.4 520 47.3
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 5.8e-100 369.0 528 49.1
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 7.6e-100 368.6 563 49.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 1.3e-99 367.9 516 50.8
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.3e-99 367.9 452 52.7
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.4e-98 364.4 457 51.9
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.9e-98 364.0 514 47.9
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 2.5e-98 363.6 540 48.5
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 9.3e-98 361.7 511 49.3
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 6.0e-97 359.0 519 49.1
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.0e-97 359.0 517 48.9
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 2.3e-96 357.1 519 50.1
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 6.7e-96 355.5 545 47.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.3e-95 352.8 517 49.5
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 4.3e-95 352.8 440 52.5
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.2e-94 348.6 562 45.6
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 2.4e-93 347.1 561 46.2
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.0e-91 341.7 544 45.6
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.2e-91 340.5 507 49.3
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 5.0e-91 339.3 465 49.7
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 6.5e-91 339.0 545 46.6
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.1e-90 338.2 561 45.1
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 4.2e-90 336.3 460 48.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 9.4e-90 335.1 515 47.0
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.6e-89 333.2 565 43.5
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 6.1e-89 332.4 556 43.9
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 3.9e-88 329.7 413 52.5
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.1e-87 328.2 542 45.9
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 3.3e-87 326.6 516 46.7
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.2e-86 323.9 567 45.9
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.8e-85 320.9 468 48.3
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 2.4e-85 320.5 448 49.6
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 5.3e-85 319.3 461 47.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.6e-84 317.0 571 42.9
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 5.9e-84 315.8 434 48.8
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.0e-80 303.5 520 45.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 4.4e-79 299.7 457 47.9
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 9.7e-79 298.5 513 44.4
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.1e-77 295.0 422 48.6
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 3.8e-75 286.6 596 39.3
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-74 285.0 452 46.5
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.4e-74 284.6 548 41.6
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 7.2e-74 282.3 460 46.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.8e-72 277.7 548 41.2
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.8e-72 277.7 526 41.8
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.2e-72 276.2 548 40.9
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 2.8e-70 270.4 522 40.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 8.2e-70 268.9 339 50.1
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.8e-69 267.7 517 40.4
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 4.2e-66 256.5 511 39.3
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.6e-65 254.6 546 38.3
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.4e-64 251.5 513 42.1
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 9.7e-63 245.4 511 39.3
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.1e-61 240.4 512 38.9
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 3.1e-61 240.4 512 38.7
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.6e-60 238.0 512 38.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.6e-60 238.0 516 38.2
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-57 228.4 333 51.4
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 4.7e-57 226.5 180 67.8
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.6e-51 206.1 332 44.3
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 2.4e-45 187.6 282 45.7
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 4.0e-40 170.2 241 50.6
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.3e-38 165.2 178 53.9
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 4.9e-38 163.3 489 31.7
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 9.2e-37 159.1 427 35.1
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 8.6e-35 152.5 496 33.3
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 4.7e-33 146.7 530 29.2
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.9e-27 127.1 307 38.1
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 4.3e-26 123.6 138 55.8
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 7.3e-26 122.9 462 29.7
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.7e-19 101.7 160 43.8
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.5e-18 98.6 152 44.7
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 2.8e-17 94.4 134 52.2
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 4.7e-17 93.6 432 29.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 7.1e-13 79.7 98 52.0
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.5e-10 71.2 129 43.4
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 8.4e-06 56.2 59 57.6


User provided reference genes

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