Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.0e-72 273.5 137 100.0
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.4e-47 191.8 107 86.9
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 7.2e-45 184.1 108 85.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-44 182.2 109 77.1
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.7e-44 182.2 108 81.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.7e-42 174.5 107 74.8
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 5.7e-42 174.5 107 76.6
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 6.3e-41 171.0 108 75.9
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.4e-40 169.9 108 75.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.4e-40 169.1 107 74.8
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 3.1e-40 168.7 108 77.8
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 9.1e-40 167.2 108 74.1
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.2e-39 166.8 108 75.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.2e-39 166.8 108 73.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.0e-39 166.0 107 73.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.0e-39 166.0 108 75.0
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.6e-39 165.6 107 71.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.4e-39 165.2 107 72.0
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 4.5e-39 164.9 107 71.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 4.5e-39 164.9 107 73.8
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.9e-39 164.5 110 71.8
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.0e-38 163.7 107 73.8
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.2e-38 162.5 117 64.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.2e-38 162.5 107 72.0
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.9e-38 162.2 108 74.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.8e-38 161.8 107 72.9
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 3.8e-38 161.8 108 73.1
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.8e-38 161.8 107 70.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 3.8e-38 161.8 106 71.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 6.5e-38 161.0 108 67.6
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 6.5e-38 161.0 114 65.8
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 6.5e-38 161.0 109 68.8
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 8.5e-38 160.6 107 68.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 8.5e-38 160.6 107 69.2
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 8.5e-38 160.6 108 72.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 8.5e-38 160.6 107 68.2
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 8.5e-38 160.6 136 60.3
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 8.5e-38 160.6 108 73.1
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.1e-37 160.2 107 68.2
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.1e-37 160.2 108 71.3
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.4e-37 159.8 107 69.2
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.4e-37 159.8 104 73.1
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.5e-37 159.1 107 68.2
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.5e-37 159.1 107 68.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 3.2e-37 158.7 109 71.6
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.2e-37 158.7 108 71.3
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 4.2e-37 158.3 107 71.0
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.2e-37 158.3 107 72.0
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.2e-37 158.3 107 67.3
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 4.2e-37 158.3 108 72.2
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.2e-37 158.3 109 69.7
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 5.5e-37 157.9 113 67.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 5.5e-37 157.9 107 67.3
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.5e-37 157.9 108 68.5
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 5.5e-37 157.9 87 87.4
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 7.2e-37 157.5 108 71.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 7.2e-37 157.5 107 71.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 7.2e-37 157.5 107 71.0
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 7.2e-37 157.5 107 71.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.1e-36 156.0 107 66.4
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.1e-36 156.0 108 70.4
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.1e-36 156.0 107 67.3
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.1e-36 156.0 108 70.4
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.1e-36 156.0 108 70.4
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 2.1e-36 156.0 107 70.1
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.7e-36 155.6 108 69.4
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 2.7e-36 155.6 112 68.8
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.7e-36 155.6 107 70.1
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.6e-36 155.2 114 64.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 4.7e-36 154.8 107 69.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.7e-36 154.8 108 71.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.1e-36 154.5 107 67.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.0e-35 153.7 100 79.0
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.4e-35 153.3 107 69.2
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.4e-35 153.3 107 64.5
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.8e-35 152.9 108 67.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 1.8e-35 152.9 106 67.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.3e-35 152.5 107 69.2
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.9e-35 151.8 107 67.3
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 3.9e-35 151.8 107 67.3
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 5.1e-35 151.4 109 65.1
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 6.7e-35 151.0 108 69.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 6.7e-35 151.0 108 66.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 8.8e-35 150.6 108 65.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.1e-34 150.2 108 66.7
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.0e-34 149.4 108 69.4
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 2.6e-34 149.1 88 81.8
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.3e-34 148.7 108 65.7
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 5.7e-34 147.9 108 65.7
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 7.4e-34 147.5 108 65.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.3e-33 146.7 107 67.3
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.7e-33 146.4 108 63.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-33 146.0 107 64.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.7e-33 145.2 87 81.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 6.3e-33 144.4 107 63.6
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.2e-33 144.1 107 63.6
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.4e-32 142.5 107 62.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 3.1e-32 142.1 98 66.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.2e-31 140.2 107 61.7
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.5e-31 139.8 95 67.4
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.5e-31 139.8 84 81.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.6e-31 139.0 107 62.6
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.6e-31 139.0 103 64.1
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.5e-31 138.3 84 79.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.5e-31 138.3 109 57.8
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.9e-31 137.9 107 60.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 7.7e-31 137.5 112 59.8
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.7e-31 137.5 107 57.9
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 7.7e-31 137.5 90 72.2
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.7e-30 136.3 108 63.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.2e-30 136.0 107 61.7
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.8e-30 135.2 107 58.9
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.0e-30 134.8 108 63.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 6.5e-30 134.4 91 71.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.1e-29 133.7 107 64.5
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.4e-29 133.3 107 57.0
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.9e-29 132.9 108 62.0
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.9e-29 132.9 107 57.0
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 3.2e-29 132.1 99 65.7
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 4.2e-29 131.7 108 61.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 5.5e-29 131.3 110 59.1
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.4e-29 130.6 86 74.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.7e-28 129.0 86 74.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.7e-28 129.0 93 67.7
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 8.0e-28 127.5 85 72.9
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 8.0e-28 127.5 108 60.2
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.4e-27 126.7 107 57.9
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.3e-27 125.9 86 68.6
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.3e-27 125.9 85 70.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.0e-27 125.6 85 68.2
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.0e-27 125.6 85 68.2
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.9e-27 125.2 108 53.7
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.6e-26 122.5 87 62.1
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.6e-26 122.5 107 54.2
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 3.7e-25 118.6 86 67.4
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 5.3e-24 114.8 72 68.1
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 5.3e-24 114.8 107 48.6
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.6e-23 112.5 85 62.4
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.7e-23 110.9 87 62.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 7.7e-23 110.9 107 45.8
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.7e-22 109.8 85 61.2
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 4.2e-21 105.1 87 58.6
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.6e-20 103.2 109 47.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 2.1e-20 102.8 65 76.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.7e-20 101.7 109 46.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 5.2e-19 98.2 90 55.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 9.7e-18 94.0 108 42.6
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.8e-17 92.4 112 41.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.8e-17 92.4 87 55.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.1e-16 90.5 107 41.1
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 4.1e-16 88.6 73 63.0
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 7.0e-16 87.8 84 54.8
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-14 83.6 91 47.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.5e-13 79.3 110 40.9
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.2e-13 79.0 58 67.2
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 5.2e-11 71.6 109 37.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 3.4e-10 68.9 109 39.4
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 9.1e-08 60.8 41 75.6


User provided reference genes

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