Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.5e-167 592.0 297 100.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 7.2e-159 563.9 283 99.6
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.2e-147 525.8 283 91.9
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 5.5e-143 511.1 283 87.6
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.8e-141 506.1 299 84.9
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.4e-138 495.7 283 86.6
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 9.2e-138 493.8 317 80.1
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.7e-137 492.3 283 85.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.9e-136 488.8 283 84.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.5e-135 486.5 286 83.6
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 3.3e-135 485.3 283 84.1
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 5.6e-135 484.6 283 83.7
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 7.3e-135 484.2 283 84.5
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 7.3e-135 484.2 283 84.5
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.2e-134 483.4 283 84.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.6e-134 483.0 283 84.1
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.6e-134 483.0 283 83.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-134 482.6 283 84.1
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.1e-134 482.6 283 84.8
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 2.1e-134 482.6 283 83.4
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.0e-133 480.3 283 83.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.4e-133 479.9 283 83.4
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.4e-133 479.9 283 83.4
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.8e-133 479.6 282 84.0
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 4.0e-133 478.4 283 84.5
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.8e-133 477.6 283 82.3
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.2e-132 476.9 283 82.7
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 2.0e-132 476.1 282 83.3
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.6e-132 475.7 283 83.4
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.6e-132 475.7 283 83.0
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.4e-132 475.3 283 82.3
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.8e-132 474.6 282 83.3
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.8e-132 474.6 282 83.3
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 5.8e-132 474.6 284 82.7
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 5.8e-132 474.6 283 83.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 7.5e-132 474.2 283 82.7
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 2.2e-131 472.6 283 82.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.9e-131 472.2 283 80.9
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 4.9e-131 471.5 274 84.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 4.9e-131 471.5 282 82.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 6.4e-131 471.1 282 81.2
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.4e-130 469.9 284 80.6
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-130 468.8 283 82.3
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 3.2e-130 468.8 282 82.3
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.1e-130 468.4 282 81.9
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 5.4e-130 468.0 283 82.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 5.4e-130 468.0 283 81.3
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 9.2e-130 467.2 283 82.0
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.2e-129 466.8 284 79.6
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.6e-129 466.5 282 81.9
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.7e-129 465.7 283 80.6
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 2.7e-129 465.7 281 81.1
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 4.6e-129 464.9 283 81.3
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 4.6e-129 464.9 282 80.9
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 6.0e-129 464.5 283 80.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.0e-128 463.8 282 81.2
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.3e-128 462.6 283 79.9
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.3e-128 462.6 282 81.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.0e-128 461.5 283 80.2
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 6.6e-128 461.1 279 82.1
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.6e-128 460.7 283 80.9
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.6e-128 460.7 283 80.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.1e-127 460.3 283 79.2
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.5e-127 459.9 283 78.1
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.9e-127 459.5 283 78.4
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.5e-127 459.1 282 81.2
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.3e-127 458.8 284 79.9
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 9.5e-127 457.2 282 80.1
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 9.5e-127 457.2 283 79.5
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 9.5e-127 457.2 310 75.2
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.1e-126 456.1 282 79.8
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 8.0e-126 454.1 283 78.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.3e-125 452.6 283 77.4
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 6.8e-125 451.1 282 79.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 8.9e-125 450.7 320 71.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-124 450.3 289 78.5
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 3.4e-124 448.7 283 77.4
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.5e-124 447.6 282 77.3
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.7e-123 446.4 303 74.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 9.2e-122 440.7 283 74.9
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 9.2e-122 440.7 283 73.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.6e-121 439.9 283 74.2
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.0e-120 437.2 283 77.4
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.9e-120 435.3 282 75.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.1e-120 434.9 283 78.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.1e-119 433.7 250 85.2
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.1e-119 433.7 268 79.9
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.5e-119 433.3 282 74.8
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.5e-119 432.6 348 65.2
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 7.3e-119 431.0 299 70.6
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 5.2e-117 424.9 284 74.3
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 5.2e-117 424.9 284 74.3
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 6.8e-117 424.5 283 73.1
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 8.9e-117 424.1 284 73.9
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.5e-116 423.3 284 74.3
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 2.0e-116 422.9 283 73.1
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.6e-116 422.5 283 72.8
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 9.9e-116 420.6 284 73.6
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.7e-115 419.9 284 72.5
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.2e-115 419.5 280 72.1
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.7e-115 418.7 284 71.8
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.6e-113 413.3 283 71.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 8.6e-112 407.5 251 79.3
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 3.3e-111 405.6 284 67.3
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 7.3e-111 404.4 284 71.8
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-110 402.1 250 79.2
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 8.1e-110 401.0 280 72.5
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 3.1e-109 399.1 250 77.6
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.5e-105 385.6 258 75.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.1e-103 380.6 283 70.0
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 6.2e-102 374.8 282 69.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.4e-100 368.6 288 66.7
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.6e-94 350.1 289 58.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.4e-93 347.1 206 84.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.5e-89 332.4 194 83.5
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-88 330.5 235 72.8
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 5.3e-85 318.5 181 86.7
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 5.3e-77 292.0 191 77.0
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 5.3e-77 292.0 208 71.2
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.5e-73 279.3 186 73.7
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 3.9e-72 275.8 325 46.5
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 3.0e-64 249.6 181 76.2
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.6e-57 227.3 291 46.4
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-57 226.5 142 81.0
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 5.0e-51 205.7 133 78.9
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-49 200.3 155 65.8
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 2.7e-49 199.9 301 41.2
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 8.0e-49 198.4 148 68.9
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 3.0e-40 169.9 100 84.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-39 167.9 112 75.0
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.3e-38 164.5 117 65.8
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-31 141.0 176 48.9
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 9.1e-29 131.7 91 71.4
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-26 124.0 79 74.7
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 8.0e-25 118.6 303 33.0
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.2e-23 114.8 65 83.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 7.0e-21 105.5 76 69.7
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-16 90.5 57 77.2
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-13 81.3 53 77.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 7.0e-13 79.0 81 51.9


User provided reference genes

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