Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028833 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 6.5e-37 156.8 73 100.0
Hma1.2p1_0266F.1_g106980 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 4.7e-19 97.4 64 73.4
GSVIVG01018839001 Vitis vinifera HOM05D000042 ORTHO05D000980 6.1e-19 97.1 64 70.3
Actinidia21483 Actinidia chinensis HOM05D000042 ORTHO05D000980 4.0e-18 94.4 65 73.8
Manes.02G100400 Manihot esculenta HOM05D000042 ORTHO05D000980 2.6e-17 91.7 66 71.2
Solyc02g084630.3 Solanum lycopersicum HOM05D000042 ORTHO05D000980 8.3e-16 86.7 64 65.6
Sopen02g029300 Solanum pennellii HOM05D000042 ORTHO05D000980 1.8e-15 85.5 64 64.1
PGSC0003DMG400003541 Solanum tuberosum HOM05D000042 ORTHO05D000980 4.1e-15 84.3 64 64.1
Manes.01G141900 Manihot esculenta HOM05D000042 ORTHO05D000980 7.0e-15 83.6 64 64.1
Potri.005G118000 Populus trichocarpa HOM05D000042 ORTHO05D000980 7.0e-15 83.6 66 65.2
Peaxi162Scf00083g01812 Petunia axillaris HOM05D000042 ORTHO05D000980 1.2e-14 82.8 69 60.9
QL06p034517 Quercus lobata HOM05D000042 ORTHO05D000980 2.7e-14 81.6 62 64.5
Nitab4.5_0004086g0040 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.7e-13 79.0 64 62.5
TWI73G0866 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 3.9e-13 77.8 65 63.1
MD02G1136500 Malus domestica HOM05D000042 ORTHO05D000980 5.0e-13 77.4 65 63.1
Nn5g29187 Nelumbo nucifera HOM05D000042 ORTHO05D000980 5.0e-13 77.4 64 60.9
Nitab4.5_0002266g0060 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.1e-12 76.3 64 59.4
vmacro22102 Vaccinium macrocarpon HOM05D000042 ORTHO05D000980 9.5e-12 73.2 65 60.0
Lj4A213T41 Lonicera japonica HOM05D000042 ORTHO05D000980 1.2e-11 72.8 73 53.4
Nitab4.5_0025250g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.2e-11 72.8 64 57.8
Rhsim08G0036400 Rhododendron simsii HOM05D000042 ORTHO05D000980 1.2e-11 72.8 72 56.9
Haze_03819 Corylus avellana HOM05D000042 ORTHO05D000980 2.1e-11 72.0 65 64.6
TWI09G0070 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 3.6e-11 71.2 73 52.1
Sabra05G0097000 Salix brachista HOM05D002790 ORTHO05D003033 8.0e-11 70.1 52 67.3
Ciclev10026433m.g Citrus clementina HOM05D000042 ORTHO05D000980 1.0e-10 69.7 64 62.5
Prupe.7G164100 Prunus persica HOM05D000042 ORTHO05D000980 1.8e-10 68.9 73 49.3
MD15G1250200 Malus domestica HOM05D000042 ORTHO05D000980 4.0e-10 67.8 75 49.3
Nn6g32205 Nelumbo nucifera HOM05D000042 ORTHO05D000980 4.0e-10 67.8 69 52.2
Potri.007G017000 Populus trichocarpa HOM05D000042 ORTHO05D000980 2.6e-09 65.1 62 56.5
CiPaw.08G136100 Carya illinoinensis HOM05D000042 ORTHO05D000980 3.4e-09 64.7 66 60.6
RcHm_v2.0_Chr2g0100071 Rosa chinensis HOM05D000042 ORTHO05D000980 3.4e-09 64.7 46 65.2
Cpa.g.sc6.199 Carica papaya HOM05D000042 ORTHO05D000980 4.4e-09 64.3 60 58.3
FAN26G0417 Fragaria x ananassa HOM05D000042 ORTHO05D000980 3.7e-08 61.2 49 59.2
Gohir.A05G257900 Gossypium hirsutum HOM05D000042 ORTHO05D000980 3.7e-08 61.2 53 54.7
Gohir.D05G259300 Gossypium hirsutum HOM05D000042 ORTHO05D000980 3.7e-08 61.2 53 54.7
Gorai.009G271100 Gossypium raimondii HOM05D000042 ORTHO05D000980 3.7e-08 61.2 53 54.7
Lalb_Chr23g0266321 Lupinus albus HOM05D000042 ORTHO05D000980 3.7e-08 61.2 53 52.8
CSS0025728 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 6.4e-08 60.5 53 54.7
FvH4_1g12260 Fragaria vesca HOM05D000042 ORTHO05D000980 6.4e-08 60.5 46 60.9
FAN19G0493 Fragaria x ananassa HOM05D000042 ORTHO05D000980 6.4e-08 60.5 46 60.9
FAN23G0933 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.4e-07 59.3 49 57.1
Thecc.08G036900 Theobroma cacao HOM05D000042 ORTHO05D000980 1.4e-07 59.3 53 54.7
arahy.Tifrunner.gnm1.ann1.SC2RCC Arachis hypogaea HOM05D000042 ORTHO05D000980 1.9e-07 58.9 61 47.5
Cc07_g10310 Coffea canephora HOM05D000042 ORTHO05D000980 2.4e-07 58.5 51 58.8
Manes.05G153000 Manihot esculenta HOM05D000042 ORTHO05D000980 2.4e-07 58.5 50 54.0
Duzib264G0358 Durio zibethinus HOM05D000042 ORTHO05D000980 3.2e-07 58.2 67 56.7
Glyma.04G027200 Glycine max HOM05D000042 ORTHO05D000980 3.2e-07 58.2 54 44.4
arahy.Tifrunner.gnm1.ann1.MX0VEQ Arachis hypogaea HOM05D000042 ORTHO05D000980 4.1e-07 57.8 52 51.9
Lj1g0020637 Lotus japonicus HOM05D000042 ORTHO05D000980 5.4e-07 57.4 54 46.3
Duzib041G0590 Durio zibethinus HOM05D000042 ORTHO05D000980 9.2e-07 56.6 54 51.9
Duzib093G1295 Durio zibethinus HOM05D000042 ORTHO05D000980 9.2e-07 56.6 53 50.9
Rhsim06G0027000 Rhododendron simsii HOM05D000042 ORTHO05D000980 1.2e-06 56.2 45 62.2
TWI56G0651 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.6e-06 55.8 44 54.5
Ca_02063_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 2.7e-06 55.1 54 44.4
Sc03g0003370 Simmondsia chinensis HOM05D000042 ORTHO05D000980 2.7e-06 55.1 64 53.1
HPP92_012975 Vanilla planifolia HOM05D000042 ORTHO05D000980 3.5e-06 54.7 61 52.5
Medtr3g113030 Medicago truncatula HOM05D000042 ORTHO05D000980 4.6e-06 54.3 52 42.3
HPP92_025424 Vanilla planifolia HOM05D000042 ORTHO05D000980 4.6e-06 54.3 70 44.3
DCAR_009949 Daucus carota HOM05D000042 ORTHO05D000980 6.0e-06 53.9 54 48.1
COL.COLO4_26208 Corchorus olitorius HOM05D000042 ORTHO05D000980 7.8e-06 53.5 56 50.0
PSO541G4942 Papaver somniferum HOM05D000042 ORTHO05D000980 7.8e-06 53.5 44 56.8
TPR.G31198 Trifolium pratense HOM05D000042 ORTHO05D000980 7.8e-06 53.5 51 43.1


User provided reference genes

Program Settings