Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028826 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 5.3e-204 714.1 365 100.0
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 8.6e-154 547.4 445 67.6
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 7.8e-147 524.2 447 65.3
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.0e-146 523.9 379 73.4
CSS0009574 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 4.1e-140 501.9 369 74.5
CSS0042776 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 9.2e-140 500.7 445 64.3
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.7e-115 419.5 412 60.0
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.6e-12 75.5 222 26.6
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 2.1e-11 74.3 93 38.7
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.6e-11 73.6 116 34.5
Lj4g0011576 Lotus japonicus HOM05D002777 ORTHO05D001516 1.4e-10 71.6 171 29.8
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-10 70.9 117 35.0
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 2.4e-10 70.9 99 36.4
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 5.2e-10 69.7 119 31.9
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.2e-09 68.6 119 32.8
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-09 68.6 116 33.6
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.6e-09 67.4 116 33.6
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.6e-09 67.4 203 27.6
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.4e-09 67.0 119 33.6
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 4.4e-09 66.6 117 29.9
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.9e-09 65.5 158 29.7
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-08 65.1 252 26.2
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.3e-08 65.1 89 32.6
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.3e-08 65.1 120 30.8
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.2e-08 64.3 91 39.6
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.8e-08 63.5 127 29.9
Lsat_1_v5_gn_6_27160 Lactuca sativa HOM05D003915 ORTHO05D005386 6.4e-08 62.8 184 29.9
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 6.4e-08 62.8 127 29.9
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.4e-08 62.8 218 25.2
Lj2g0018575 Lotus japonicus HOM05D002777 ORTHO05D001516 8.4e-08 62.4 117 28.2
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.4e-08 62.4 96 34.4
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.4e-08 62.4 252 25.8
Lj5g0001897 Lotus japonicus HOM05D002777 ORTHO05D001516 1.4e-07 61.6 182 26.9
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.9e-07 61.2 116 31.0
Actinidia26692 Actinidia chinensis HOM05D008219 ORTHO05D009356 3.2e-07 60.5 121 33.1
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.1e-07 59.3 77 39.0
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.1e-07 59.3 100 34.0
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.1e-07 59.3 116 31.0
Gorai.002G084400 Gossypium raimondii HOM05D000003 ORTHO05D015081 1.2e-06 58.5 134 24.6
Lj2g0018386 Lotus japonicus HOM05D002777 ORTHO05D001516 1.6e-06 58.2 117 27.4
Lsat_1_v5_gn_3_28940 Lactuca sativa HOM05D003915 ORTHO05D005386 2.1e-06 57.8 303 24.4
Lj5g0007242 Lotus japonicus HOM05D002777 ORTHO05D001516 4.6e-06 56.6 156 26.3
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 6.0e-06 56.2 126 31.7
Psat0s3204g0040 Pisum sativum HOM05D007807 ORTHO05D000006 7.8e-06 55.8 102 27.5
Sc01g0007590 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.8e-06 55.8 67 35.8


User provided reference genes

Program Settings