Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 7.1e-170 600.5 303 100.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-153 546.2 303 89.4
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.7e-152 540.8 303 90.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.3e-151 538.1 300 89.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.6e-148 528.9 301 88.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 7.6e-148 527.3 300 88.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.3e-147 526.6 303 87.8
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.7e-147 526.2 303 86.5
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 6.5e-147 524.2 300 86.3
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.6e-145 519.6 316 82.6
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 6.0e-145 517.7 303 85.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 6.0e-145 517.7 302 84.8
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.3e-144 516.5 300 85.7
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 3.0e-144 515.4 300 84.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.9e-144 515.0 300 85.3
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.1e-144 514.6 300 85.3
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 6.7e-144 514.2 300 84.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 8.7e-144 513.8 300 84.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 3.3e-143 511.9 303 84.8
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 83.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.3e-142 510.0 300 83.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.6e-142 509.6 303 83.5
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 2.1e-142 509.2 303 83.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 3.7e-142 508.4 301 82.7
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.8e-142 508.1 300 83.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 4.8e-142 508.1 303 83.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.8e-142 508.1 303 83.2
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 8.2e-142 507.3 300 82.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 8.2e-142 507.3 303 84.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.1e-141 506.9 301 81.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-141 506.9 303 83.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.1e-141 506.9 300 82.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 82.7
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 5.3e-141 504.6 303 82.5
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 6.9e-141 504.2 301 81.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 6.9e-141 504.2 301 82.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 6.9e-141 504.2 303 82.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.2e-140 503.4 302 81.8
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-140 503.1 299 83.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.0e-140 502.7 301 83.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.0e-140 502.7 300 82.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.6e-140 502.3 303 82.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.6e-140 502.3 321 79.4
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 3.4e-140 501.9 302 81.5
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 3.4e-140 501.9 303 82.2
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 82.2
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 80.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.9e-140 501.1 299 82.6
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.0e-139 500.4 303 81.5
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.3e-139 500.0 303 81.2
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.3e-139 500.0 301 82.7
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.7e-139 499.6 297 83.2
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.0e-139 498.0 303 82.8
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 8.5e-139 497.3 300 81.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.1e-138 496.9 303 81.5
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.9e-138 496.1 303 80.9
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-138 495.7 299 82.3
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 80.9
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.2e-138 495.4 300 81.0
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.2e-138 495.4 301 81.1
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 4.2e-138 495.0 303 81.8
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 79.9
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 80.9
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.2e-137 493.4 303 80.5
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 81.1
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.2e-137 493.4 302 80.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 80.5
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.1e-137 492.7 303 80.9
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.6e-137 491.5 303 79.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 81.5
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.0e-136 490.3 303 80.2
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.0e-136 490.3 303 81.2
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.3e-136 490.0 303 79.9
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.3e-136 490.0 303 80.5
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 79.9
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 6.7e-136 487.6 303 79.5
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.5e-135 486.5 300 80.3
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.5e-135 485.7 303 80.2
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 81.0
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.2e-134 482.6 303 79.9
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 2.2e-134 482.6 301 80.1
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 6.3e-134 481.1 302 79.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-134 481.1 302 79.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 6.3e-134 481.1 302 79.8
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 6.3e-134 481.1 303 79.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.8e-133 479.6 303 79.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 2.4e-133 479.2 305 78.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.1e-133 477.2 299 78.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-132 476.9 302 79.1
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-132 476.9 303 78.5
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.5e-132 476.5 303 79.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 78.9
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.4e-132 475.3 299 78.9
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.9e-132 474.6 303 77.6
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.9e-132 474.6 300 78.3
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 7.7e-132 474.2 300 79.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.3e-131 473.4 303 77.6
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.5e-130 469.2 300 78.0
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 78.2
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 4.2e-130 468.4 300 78.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.2e-130 468.4 338 72.8
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.2e-129 466.8 303 76.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 75.0
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 6.1e-129 464.5 300 76.3
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.8e-128 463.0 303 76.9
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.8e-128 460.7 303 75.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.5e-127 459.9 316 73.7
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.5e-127 459.9 303 74.9
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 74.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.6e-127 459.1 309 74.4
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 2.6e-127 459.1 340 69.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.8e-126 455.7 241 92.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 2.8e-126 455.7 303 75.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.4e-125 453.4 302 74.5
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.9e-120 435.3 259 81.5
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.6e-119 432.6 246 85.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.2e-118 429.5 312 73.1
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 5.3e-117 424.9 301 73.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 5.9e-116 421.4 300 71.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.0e-115 420.6 302 66.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.5e-114 416.8 294 69.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 6.1e-113 411.4 340 63.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 4.0e-112 408.7 290 69.7
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.7e-111 404.8 509 47.9
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.2e-110 402.9 288 69.4
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 7.0e-109 397.9 303 68.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 8.3e-102 374.4 299 62.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.8e-101 373.2 305 62.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 9.1e-101 370.9 209 86.1
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.9e-100 368.2 300 65.7
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 5.0e-99 365.2 209 84.7
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.2e-98 362.5 290 61.0
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.8e-91 339.0 200 84.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 5.0e-91 338.6 220 76.8
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 3.7e-86 322.4 246 71.1
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.0e-83 312.0 245 68.6
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.2e-76 290.8 246 58.5
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.7e-75 287.0 303 49.8
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.9e-70 268.9 154 89.0
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 4.6e-52 209.1 281 40.9
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.8e-49 199.1 274 39.8
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.0e-48 196.1 108 86.1
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 9.9e-47 191.4 173 56.1
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 7.4e-42 175.3 101 86.1
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 4.8e-41 172.6 199 52.8
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-34 151.4 84 84.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.4e-32 144.4 84 81.0
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.0e-23 114.0 108 61.1
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.0e-22 111.7 70 78.6
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 6.5e-22 109.0 247 28.7
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.5e-21 107.1 63 77.8
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 7.2e-21 105.5 83 63.9
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.6e-20 104.4 86 65.1
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.8e-19 100.9 161 39.1
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-19 100.5 121 50.4
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 8.8e-19 98.6 124 42.7
Cfa027249 Carpinus fangiana HOM05D004556 ORTHO05D123038 2.2e-14 84.0 208 29.8
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 2.2e-09 67.4 53 67.9
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.8e-08 64.3 40 75.0
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 4.1e-08 63.2 63 57.1
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 4.5e-07 59.7 46 63.0


User provided reference genes

Program Settings