Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1103.6 563 100.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1102.0 563 99.8
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.8e-286 987.6 566 89.0
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 8.5e-286 986.5 565 88.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.1e-284 980.3 553 90.2
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.2e-283 977.2 553 89.9
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.2e-283 977.2 566 87.1
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.0e-282 975.3 566 86.6
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.0e-278 963.0 562 87.7
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 6.3e-273 943.7 615 80.7
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 4.5e-271 937.6 556 84.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 5.2e-267 924.1 556 83.5
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 5.2e-267 924.1 557 82.4
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 6.8e-267 923.7 563 82.4
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.4e-264 914.1 558 81.2
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.6e-263 912.5 556 81.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.7e-263 911.8 557 81.7
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.7e-263 911.8 557 81.9
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.6e-263 911.0 556 81.8
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-262 909.8 556 81.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.7e-262 909.1 556 82.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.1e-261 906.4 556 81.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.1e-261 906.4 556 79.9
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 5.6e-261 904.0 557 81.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.3e-259 898.7 624 74.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 4.0e-259 897.9 561 79.9
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.2e-258 896.3 557 81.7
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.5e-258 896.0 556 80.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.4e-258 894.8 552 80.8
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.5e-258 893.6 552 80.6
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 9.8e-258 893.3 549 80.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-257 892.5 552 80.6
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.7e-257 892.5 563 78.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.2e-257 892.1 561 79.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.4e-256 888.6 561 79.5
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.2e-256 888.3 558 79.4
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.2e-256 888.3 555 79.5
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.1e-256 887.9 565 78.8
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.2e-256 886.7 557 79.4
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.2e-256 886.7 560 79.3
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.2e-255 886.3 560 79.1
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.1e-255 885.6 557 79.4
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.5e-255 884.8 562 79.7
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.6e-255 884.4 560 78.9
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.9e-253 879.0 560 78.8
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 7.3e-253 877.1 568 78.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.6e-252 875.9 580 76.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 4.7e-252 874.4 562 78.1
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-251 872.8 572 77.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.8e-251 872.5 556 79.9
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 3.1e-251 871.7 549 79.1
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 4.0e-251 871.3 560 77.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.4e-250 867.8 552 79.3
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.5e-250 867.1 538 81.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.5e-250 867.1 561 78.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 7.5e-250 867.1 559 76.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.7e-249 865.9 549 78.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.7e-249 865.9 556 79.5
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.7e-249 865.9 557 77.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 3.7e-249 864.8 557 77.6
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 4.9e-249 864.4 557 77.6
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 8.3e-249 863.6 585 75.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.1e-248 863.2 549 78.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.4e-248 862.1 549 77.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 3.2e-248 861.7 549 78.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 4.1e-248 861.3 557 77.6
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.1e-248 860.5 552 79.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.6e-247 859.4 561 75.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.6e-247 857.8 565 76.6
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-246 856.3 552 79.3
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 7.3e-245 850.5 535 78.7
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.6e-244 848.2 557 76.7
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.4e-243 846.3 546 78.4
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.4e-243 846.3 555 77.5
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.5e-242 842.8 563 76.7
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.5e-242 842.8 551 77.9
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.4e-242 841.6 551 77.9
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.4e-242 841.3 553 75.6
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 4.4e-242 841.3 552 76.1
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 7.6e-242 840.5 553 75.6
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 7.6e-242 840.5 551 77.5
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 9.9e-242 840.1 556 75.5
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-240 835.9 606 73.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.1e-239 832.4 562 75.4
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 6.0e-239 830.9 553 75.0
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.0e-238 830.1 550 74.7
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.0e-238 830.1 562 75.3
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.3e-238 828.9 553 74.7
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.9e-238 828.2 595 72.6
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 5.1e-238 827.8 549 76.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.1e-237 826.6 550 74.4
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.9e-237 825.9 531 77.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.3e-237 825.1 539 78.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 4.3e-237 824.7 555 74.6
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 4.3e-237 824.7 552 73.6
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.2e-236 823.2 600 70.7
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 5.3e-235 817.8 552 73.7
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 9.0e-235 817.0 548 76.6
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.0e-234 815.8 552 73.9
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.0e-234 815.8 552 73.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 2.6e-234 815.5 550 74.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-233 813.1 552 73.6
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-233 813.1 552 73.7
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.4e-233 810.8 549 73.4
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-232 810.1 536 74.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.7e-231 805.4 557 73.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-229 800.0 553 73.2
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 9.6e-229 797.0 551 71.7
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 2.8e-228 795.4 631 65.3
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 3.1e-227 792.0 531 74.0
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 4.0e-227 791.6 504 77.2
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.3e-225 786.6 551 69.9
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 3.8e-225 785.0 553 70.7
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 4.2e-224 781.6 454 87.0
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 7.1e-224 780.8 556 71.9
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.5e-218 761.5 556 67.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.1e-213 746.9 472 78.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.4e-211 740.0 575 65.7
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.2e-208 728.4 480 76.7
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-206 723.4 469 77.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.4e-205 717.6 557 66.8
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.6e-199 699.9 504 66.7
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.3e-197 692.2 560 61.2
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 8.8e-190 667.5 548 60.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.4e-184 650.2 557 59.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.1e-181 640.6 411 76.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.5e-168 597.0 358 82.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.9e-168 596.7 359 84.7
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 5.4e-163 578.6 392 72.4
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-161 573.5 394 71.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.9e-160 570.1 394 71.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 7.8e-146 521.5 549 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 3.6e-135 486.1 530 46.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.3e-132 477.6 317 74.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 2.4e-126 456.8 272 83.5
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-119 434.5 334 67.4
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.6e-101 372.1 220 80.0
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.5e-85 319.7 200 85.0
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-84 318.5 195 76.4
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.2e-66 258.5 195 67.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 5.4e-54 216.5 152 69.7
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.0e-53 214.5 141 75.2
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-52 211.8 147 72.1
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.3e-47 192.6 189 57.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 7.7e-45 186.0 117 75.2
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 8.0e-34 149.4 127 68.5
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.7e-28 131.7 121 62.0
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.1e-25 122.5 88 67.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.4e-24 117.5 89 68.5
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 8.3e-23 112.8 109 55.0
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.4e-22 111.3 89 59.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 7.8e-21 106.3 81 66.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.4e-09 68.9 53 60.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.0e-08 65.1 107 35.5
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 3.8e-07 60.8 34 82.4


User provided reference genes

Program Settings