Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028772 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 5.4e-145 517.7 270 100.0
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 7.5e-46 188.3 409 36.7
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.5e-41 174.1 399 35.6
Actinidia16803 Actinidia chinensis HOM05D014353 ORTHO05D002944 9.5e-33 144.8 397 36.5
Rhsim13G0191200 Rhododendron simsii HOM05D014353 ORTHO05D002944 9.5e-33 144.8 361 35.2
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 4.7e-32 142.5 197 46.2
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 6.4e-29 132.1 148 52.7
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 5.4e-28 129.0 193 42.5
Actinidia35571 Actinidia chinensis HOM05D014353 ORTHO05D002944 1.4e-23 114.4 125 56.0
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 5.8e-22 109.0 296 31.8
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.9e-20 104.0 186 37.1
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 7.8e-19 98.6 296 30.1
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.3e-18 97.8 296 29.7
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.1e-17 94.7 294 29.6
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 7.3e-17 92.0 319 27.6
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.4e-15 87.8 227 33.5
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.4e-15 87.8 109 45.0
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 2.3e-15 87.0 304 28.3
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.9e-13 80.1 165 30.9
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 6.4e-13 79.0 149 34.9
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.4e-12 77.8 282 28.4
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 5.4e-12 75.9 185 30.3
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 9.2e-12 75.1 285 27.7
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 9.2e-12 75.1 82 47.6
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.2e-11 74.7 87 46.0
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 2.7e-11 73.6 83 45.8
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.7e-11 73.6 188 30.9
CAN.G370.64 Capsicum annuum HOM05D014572 ORTHO05D016880 2.7e-11 73.6 142 37.3
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 2.7e-11 73.6 196 29.1
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.6e-11 72.8 82 45.1
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 6.0e-11 72.4 161 31.1
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 6.0e-11 72.4 155 31.6
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 6.0e-11 72.4 114 35.1
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 6.0e-11 72.4 74 44.6
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 7.8e-11 72.0 79 49.4
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 7.8e-11 72.0 133 33.8
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.0e-10 71.6 82 46.3
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 1.0e-10 71.6 87 46.0
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.3e-10 71.2 82 42.7
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.7e-10 70.9 176 30.7
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 1.7e-10 70.9 97 40.2
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.7e-10 70.9 82 43.9
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 1.7e-10 70.9 187 29.4
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 2.3e-10 70.5 82 45.1
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 2.3e-10 70.5 82 45.1
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 2.3e-10 70.5 82 45.1
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 2.3e-10 70.5 82 43.9
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 3.9e-10 69.7 176 30.7
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 3.9e-10 69.7 128 33.6
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 3.9e-10 69.7 169 33.1
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 3.9e-10 69.7 82 42.7
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 5.1e-10 69.3 178 32.0
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 5.1e-10 69.3 153 32.7
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 6.6e-10 68.9 79 45.6
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 6.6e-10 68.9 224 27.2
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 8.6e-10 68.6 92 40.2
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 8.6e-10 68.6 82 42.7
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 8.6e-10 68.6 74 45.9
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 8.6e-10 68.6 130 39.2
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 1.1e-09 68.2 82 42.7
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.1e-09 68.2 82 42.7
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 1.5e-09 67.8 82 41.5
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.9e-09 67.4 221 27.1
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 1.9e-09 67.4 93 38.7
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 1.9e-09 67.4 105 40.0
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 2.5e-09 67.0 79 44.3
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 2.5e-09 67.0 217 31.3
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 3.3e-09 66.6 120 39.2
Nitab4.5_0009762g0030 Nicotiana tabacum HOM05D014572 ORTHO05D016880 3.3e-09 66.6 148 31.1
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 3.3e-09 66.6 162 30.9
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 4.3e-09 66.2 300 24.7
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 4.3e-09 66.2 83 43.4
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 4.3e-09 66.2 119 36.1
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 4.3e-09 66.2 103 37.9
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 5.6e-09 65.9 74 47.3
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 5.6e-09 65.9 124 38.7
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 9.6e-09 65.1 74 44.6
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 9.6e-09 65.1 80 42.5
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 9.6e-09 65.1 287 26.1
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 9.6e-09 65.1 287 26.1
Cc02_g14720 Coffea canephora HOM05D014572 ORTHO05D016880 9.6e-09 65.1 74 41.9
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 9.6e-09 65.1 106 39.6
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 9.6e-09 65.1 104 36.5
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.2e-08 64.7 69 43.5
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 1.2e-08 64.7 82 41.5
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.2e-08 64.7 69 46.4
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 1.6e-08 64.3 287 25.4
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 1.6e-08 64.3 108 37.0
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 1.6e-08 64.3 287 25.4
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 1.6e-08 64.3 108 37.0
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.6e-08 64.3 75 44.0
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.6e-08 64.3 167 29.9
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 1.6e-08 64.3 167 29.9
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 2.1e-08 63.9 71 42.3
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 2.1e-08 63.9 107 38.3
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 2.8e-08 63.5 74 43.2
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 2.8e-08 63.5 74 43.2
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 2.8e-08 63.5 74 43.2
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 2.8e-08 63.5 118 38.1
Peaxi162Scf00261g01114 Petunia axillaris HOM05D014572 ORTHO05D016880 2.8e-08 63.5 130 35.4
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.8e-08 63.5 111 34.2
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 2.8e-08 63.5 74 41.9
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 2.8e-08 63.5 132 31.1
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.6e-08 63.2 74 45.9
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 3.6e-08 63.2 179 29.1
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 3.6e-08 63.2 95 36.8
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 3.6e-08 63.2 80 43.8
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 3.6e-08 63.2 199 30.2
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea HOM05D004563 ORTHO05D002944 4.7e-08 62.8 113 32.7
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 4.7e-08 62.8 80 41.2
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 4.7e-08 62.8 74 39.2
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 4.7e-08 62.8 113 36.3
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 4.7e-08 62.8 113 36.3
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.7e-08 62.8 167 29.3
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 6.2e-08 62.4 74 43.2
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 6.2e-08 62.4 162 29.6
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 6.2e-08 62.4 120 35.8
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 8.1e-08 62.0 280 25.7
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 8.1e-08 62.0 74 40.5
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 8.1e-08 62.0 74 40.5
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 8.1e-08 62.0 70 41.4
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 8.1e-08 62.0 117 33.3
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.1e-07 61.6 127 32.3
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 1.1e-07 61.6 74 43.2
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 1.1e-07 61.6 74 43.2
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.1e-07 61.6 172 29.1
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 1.4e-07 61.2 74 41.9
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.4e-07 61.2 77 40.3
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.4e-07 61.2 102 35.3
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 1.4e-07 61.2 72 38.9
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.4e-07 61.2 82 39.0
MSTRG.14955 Avicennia marina HOM05D008023 ORTHO05D002944 1.8e-07 60.8 74 41.9
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 1.8e-07 60.8 74 41.9
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 1.8e-07 60.8 100 38.0
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 1.8e-07 60.8 76 43.4
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.8e-07 60.8 74 39.2
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.4e-07 60.5 123 30.9
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.4e-07 60.5 75 38.7
Migut.M01048 Erythranthe guttata HOM05D014353 ORTHO05D002944 2.4e-07 60.5 311 24.8
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 2.4e-07 60.5 89 40.4
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 4.0e-07 59.7 82 40.2
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.0e-07 59.7 94 38.3
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.0e-07 59.7 94 38.3
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.0e-07 59.7 94 38.3
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 4.0e-07 59.7 69 40.6
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 4.0e-07 59.7 80 38.8
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 4.0e-07 59.7 95 38.9
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 4.0e-07 59.7 77 39.0
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 4.0e-07 59.7 82 39.0
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 5.2e-07 59.3 113 31.0
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 5.2e-07 59.3 83 31.3
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 5.2e-07 59.3 77 37.7
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 5.2e-07 59.3 86 39.5
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 6.8e-07 58.9 45 55.6
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 6.8e-07 58.9 82 37.8
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 6.8e-07 58.9 83 41.0
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 6.8e-07 58.9 113 31.0
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 8.9e-07 58.5 84 36.9
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 8.9e-07 58.5 183 30.1
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 8.9e-07 58.5 74 43.2
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 8.9e-07 58.5 126 32.5
Oeu051114.4 Olea europaea HOM05D008023 ORTHO05D002944 8.9e-07 58.5 164 29.3
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 8.9e-07 58.5 86 37.2
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 8.9e-07 58.5 169 27.8
Glyma.12G122400 Glycine max HOM05D004563 ORTHO05D002944 1.2e-06 58.2 74 43.2
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 1.2e-06 58.2 87 39.1
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 1.2e-06 58.2 118 33.9
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 1.2e-06 58.2 83 41.0
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.2e-06 58.2 233 26.2
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.5e-06 57.8 82 37.8
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.5e-06 57.8 74 36.5
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 2.0e-06 57.4 71 39.4
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 2.6e-06 57.0 267 25.8
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 2.6e-06 57.0 109 33.9
SGA_v2.0_scaffold73G24197 Striga asiatica HOM05D008023 ORTHO05D002944 2.6e-06 57.0 110 32.7
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 3.4e-06 56.6 85 43.5
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 4.4e-06 56.2 117 35.0
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 4.4e-06 56.2 114 35.1
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 5.8e-06 55.8 74 36.5
Lalb_Chr14g0367401 Lupinus albus HOM05D004563 ORTHO05D002944 5.8e-06 55.8 88 38.6
AUR62038995 Chenopodium quinoa HOM05D007922 ORTHO05D009490 7.6e-06 55.5 118 33.1
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 7.6e-06 55.5 74 37.8
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 7.6e-06 55.5 154 32.5
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 7.6e-06 55.5 71 39.4


User provided reference genes

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